FMO08742.5prime Sequence
413 bp (-85 high quality bases) assembled on 2010-06-29
> FMO08742.5prime
CAATCCACATGATCTACTCGGACAATTGCTGTTGCTGCGTGGATCTGAAA
TGCGGAAGCATCCTGATAGCCATCGTTGAGGTGCTAATACGTGGACTAGA
TCGCTTCTTTGTTGATCGTGACAGCCTGCTGGGACTTTTTTCCCTTGTGG
TGAGCGGTATCTACGTTATCTGCTGCATTTTTCTACTGCTGGGAGCAGTT
CTGGGCCTGAGATATTTTCTGTTGCCTTACCTCTCACTTTCCTGCCTGCG
GTTCTTCATTTTATTTGCCGAAGGCGTGTTTGTATCCACAGAGGGCATCA
TGAATGAATATCTAGTTTTCGATATTCTTCAATCCCTTCTAGGCTTGTAC
TTTTGGCTGGTGGTCTACTCCTATTATGATCGCTTAAAGGACGCAGGTGG
CTTTCTAGACCAT
FMO08742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34230-RA | 546 | CG34230-RA | 48..433 | 9..394 | 1855 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11861655..11861788 | 203..336 | 610 | 97 | Plus |
| 2R | 25286936 | 2R | 11861357..11861469 | 9..121 | 550 | 99.1 | Plus |
| 2R | 25286936 | 2R | 11861516..11861602 | 118..204 | 435 | 100 | Plus |
| 2R | 25286936 | 2R | 11861845..11861902 | 337..394 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:08:44 has no hits.
FMO08742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:31:11 Download gff for
FMO08742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34230-RA | 40..444 | 2..407 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:49 Download gff for
FMO08742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34230-RA | 40..444 | 2..407 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:59 Download gff for
FMO08742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34230-RA | 40..444 | 2..407 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:59 Download gff for
FMO08742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11861349..11861465 | 2..117 | 95 | -> | Plus |
| 2R | 11861516..11861601 | 118..203 | 100 | -> | Plus |
| 2R | 11861656..11861788 | 204..336 | 96 | -> | Plus |
| 2R | 11861845..11861913 | 337..407 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:49 Download gff for
FMO08742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7748854..7748970 | 2..117 | 95 | -> | Plus |
| arm_2R | 7749021..7749106 | 118..203 | 100 | -> | Plus |
| arm_2R | 7749161..7749293 | 204..336 | 96 | -> | Plus |
| arm_2R | 7749350..7749418 | 337..407 | 93 | | Plus |
