Clone FMO08756 Report

Search the DGRC for FMO08756

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:87
Well:56
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34115-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08756.5prime Sequence

257 bp (257 high quality bases) assembled on 2010-06-29

> FMO08756.5prime
CAGTCGACATGGCTAAATTGAGTGCCCTGCTGCTGCCCCTAATTTTGTTT
ATTGTGGCCTTTGTGGCGCACACAACTTTTGCTACAGTGCAGCCAAAAGC
ACCGAACTTCCAGTACTTCGAAAGGCCCAAGTACCGTTATCCCTACTACG
ATGAACACGGGCGCGGAAAACTTCTCTACGGCTACGGCGGACCGGAATTG
TACCAATACAAGACCTACACGCCCTTGGAGGGCATTCACGCAAGCTTTCT
AGACCAT

FMO08756.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG34115-RA 418 CG34115-RA 106..337 8..239 1160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20976737..20976853 123..239 585 100 Plus
2R 25286936 2R 20976595..20976681 39..125 435 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:12:59 has no hits.

FMO08756.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:30:55 Download gff for FMO08756.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34115-RA 78..309 8..239 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:48 Download gff for FMO08756.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34115-RA 106..337 8..239 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:36 Download gff for FMO08756.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34115-RA 106..337 8..239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:36 Download gff for FMO08756.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20975593..20975623 8..38 100 -> Plus
2R 20976595..20976680 39..124 100 -> Plus
2R 20976739..20976853 125..239 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:48 Download gff for FMO08756.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16864244..16864358 125..239 100   Plus
arm_2R 16863098..16863128 8..38 100 -> Plus
arm_2R 16864100..16864185 39..124 100 -> Plus