FMO08779.5prime Sequence
1141 bp (1026 high quality bases) assembled on 2010-06-29
> FMO08779.5prime
CAGTCGACATGGCAACCGGTAGAAATCGTGGTAACCACAAGGAAGGTGGC
ACTATCAACATCGGACAGCCGCTATTCCAGGTGCCTCATTCATTGCGCAA
GGAGCACGACTTTTTCAGCTCACAGCTGTTCCGAAAATTGCAGTACGACC
TGGAGGAGGTGAGCCGCAGCCAGGAGCTTTCCAAAGTGAGTCCCATAACC
CGCGACTTCATCGAGGAGGCAGCGATGACGCAGGAAATGCAAGATCTTAA
GCGTGCGGAGTTTGTGGAGAGGAAACGTCGCCAGCAATTGCGGCGGGATT
GCGAGGAACTGCGCGACTTGGCGGAGCAGCTGCGCCTAGCCGCCATTTCC
AGGGATATAGCCGAGAATTTGGAGGAGAAAAAACGTCGTCGACAGCTAGA
CATCAAATTGGAAGCCGCGGAAGTGTCCCAAGAGCGCTGTCTGCTGGAGG
TCAGGCAACGTGAGAAGGAAGTGGCTCTTAAGGAGGAACAACGCCGCCTT
AGGGAGTCCTTGGCTGAACAAATGGAGGAGAACCGCCGACGGCGCCTGCA
AGAGCACGCTCAGGTGATGAATGACCGGGAGCTGAGCCTTCTGATGCAGA
AGCAAATCCAGGAAGAGGATCGAGCCCAGGAGCTGGAGGCGCAGAGAAAA
AAACTACAAAAGCGACAGGACATGCTGCGGTCCATCAAGGAGAACCAGGA
ACTCAGAGAATGGCAGCGAGCTCAATACAACCAGGAGTTGAGTGACTTAG
TCCAGAAGCAAAGTGACATGGAGCGCAGAAACTCCAGCTGGAGGCTGAAC
GCCAGGAGATTCAACGCAAAAAACAAGAATCAGCATTCGTTTGGGCCAGC
AAGTCCTAGAAATCGAAAACAAAAACGGCATCGCGACAATCTGCTGCTGG
ATCTGTTGGAGGCGGAGTACACGGCCAGAGTGACGAGCGCTATCGCACAG
ATGCAGCAGAGCAGATGTCTCGCAGCGCACAGACAGAGTGGATCGCTATC
GACAGAGTGAGCATCGTAGATGCCGAATGCAGATGAGCGGGCGGAAATGC
TACCGCAGAGGAGGCGCGGATCATCACGATCGAAAGCACTGATGAATTCG
CGACCGTCATGAGCTCTGCTGCTGATGGAATCCGAACGCCG
FMO08779.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7352-RA | 1524 | CG7352-RA | 45..1126 | 8..1067 | 4855 | 97.9 | Plus |
| CG7352-RC | 1522 | CG7352-RC | 58..1124 | 23..1067 | 4780 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8347763..8348624 | 8..867 | 4210 | 99.8 | Plus |
| 3R | 32079331 | 3R | 8348683..8348789 | 871..973 | 370 | 96.3 | Plus |
Blast to na_te.dros performed 2014-11-28 23:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 3394..3444 | 809..857 | 124 | 74.5 | Plus |
FMO08779.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:30:28 Download gff for
FMO08779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7352-RA | 1..1035 | 9..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:38 Download gff for
FMO08779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7352-RA | 42..1080 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:53 Download gff for
FMO08779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7352-RA | 42..1080 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:53 Download gff for
FMO08779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8347760..8348624 | 1..867 | 99 | -> | Plus |
| 3R | 8348679..8348852 | 868..1027 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:38 Download gff for
FMO08779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4173482..4174346 | 1..867 | 99 | -> | Plus |
| arm_3R | 4174401..4174574 | 868..1027 | 91 | == | Plus |
