FMO08782.5prime Sequence
1061 bp (948 high quality bases) assembled on 2010-06-29
> FMO08782.5prime
CAGTCGACATGTATGCAGACGAAATGGCAATCGCTAGCAACGTTGTCGAA
GCGGGGAACGCGGTTCGCGCGGAAAAAGGCAGAAAATATTTTTATTTTCG
AAAGATGATAGGAGATTATATTGACACCTCTATTCGCATTGTAGCCACCG
TGTTCTTGGCTGATCTGCTCCTTCGCTTGTACCGCTGTGTCGTCGAATAT
GGGAGCAATGGGCGGTACTATTTGCCCGAGGATCGGCTGTGGATAATCCT
GCGGCGCTCGTGCACGTATAACAACAGATCGATATACCTGATTGTGGGAT
TCCTTCTCGTAGCTTTTTTTCGAATTTCGGTTACCGGGAATTACAGGAAC
GTAATGCCCACGACGCTGTTTCTGTTCCAAATGCCGCTCTACTGGATATG
GAGCTTTACCGATATGGACCAAAGCACCCTGAGCTACTCGCACTGGATAC
GTGACTCCCATGGACTAGACTATGCGGCCGGAATGGCCTCCAACTACTTT
CACGGCTACCTCAAACTTTCACTGCCCGAACGCAAGGATGATGGGCTCAA
ACATCGATTAGCAATGTACGAGGACAAGAATAATGTTACCTTCGGCATTA
AACGACTGGTTATCCTCATTCCCGATGAGATGTTTGTCAACGGCGTACTA
AAAAAGCCACTTACTTGACAAAGCTGAGCCCCTGGAGACCCAGTTCATCA
ACCGAGCCGGTGTCTATCGTCCTTTCAAGCACGATGTCTACAGAATGAAC
AAAAAGGTCAATGGCAGGACCTATTACTTTGCCGTCGAGGGTGCCACGCC
CATGATATCCTTTCTTCGATGCGACGTACTCTAACTTGTCGGGTACCTGG
CAGATGCAGGAACTAAAGCGAGAGATCTGGATCAAGTTCTACAGCACATG
AAAAGAACTTATTACTACTTGGGCGGAGACTCGAGACCTTGTAAAGCTCA
TCATCTATAACTCCCATGATAGCAGGGCCACCTGTGGATGTTGGCGATTG
CTTGTAGCTCATATGCAAACAAACCAAACTATGACGAAATTTCACGCAAG
CTTCTAGACAT
FMO08782.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1667-RC | 1576 | CG1667-RC | 208..1247 | 9..1043 | 4865 | 98.5 | Plus |
| CG1667-RB | 1361 | CG1667-RB | 1..1032 | 17..1043 | 4825 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9843959..9844409 | 123..573 | 2255 | 100 | Plus |
| 2R | 25286936 | 2R | 9844620..9844904 | 677..962 | 1240 | 97.9 | Plus |
| 2R | 25286936 | 2R | 9843789..9843903 | 9..123 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 9844459..9844565 | 571..678 | 475 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:00 has no hits.
FMO08782.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:30:36 Download gff for
FMO08782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1667-RA | 189..1240 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:37 Download gff for
FMO08782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1667-RA | 201..1252 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:51 Download gff for
FMO08782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1667-RC | 201..1252 | 1..1052 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:51 Download gff for
FMO08782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9844461..9844565 | 573..678 | 98 | -> | Plus |
| 2R | 9843782..9843903 | 1..123 | 96 | -> | Plus |
| 2R | 9844622..9844904 | 679..962 | 97 | -> | Plus |
| 2R | 9843960..9844408 | 124..572 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:37 Download gff for
FMO08782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5731287..5731408 | 1..123 | 96 | -> | Plus |
| arm_2R | 5731465..5731913 | 124..572 | 100 | -> | Plus |
| arm_2R | 5731966..5732070 | 573..678 | 98 | -> | Plus |
| arm_2R | 5732127..5732409 | 679..962 | 97 | -> | Plus |
