FMO08784.5prime Sequence
1119 bp (1024 high quality bases) assembled on 2010-06-29
> FMO08784.5prime
CAGTCGACATGCCCGCATTTAAAGTTAAGGTGAAGTGGGGCCGGGAGCTC
TACACAGATATCGTTGTAAACACCGACGAGGAGCCGATTTTGTTTAAGGC
TCAGTTGTTTGCCCTCACTGGCGTTCAACCGGATCGCCAGAAAGTTATGT
GCAAGGGCGGCATTCTGAAGGATGACCAGTGGAATCTGCAGATCAAGGAC
GGCGCTGTGGTCCTGTTGCTGGGCAGCAAGGAAAGTGTTCCAGAAGTGCC
TGCCACTCCTGTCAAATTCATTGAGGACATGAATGAAGCTGAGGCAGCCA
CAGCGATGCGTCTACCGGCTGGGCTGACAAATCTGGGCAATACGTGCTAC
ATGAATGCCACTGTCCAGTGCCTGAATGCAGTGCCCGAGCTTCGCACTGC
CCTGAGCACTTTCAGTAATGATGGAACCGACACTATGTCGACCGCATTTT
CCATATCGTCTGCCATGAAGTCTATATTTGCTCAAATGGAGAAGGGCACC
ACCGTGACGCCAATTGTGCTGCTGCAGGCATTGCACCGGGCATCACCGCA
ATTTGCCCAGACTGGCGAAAATGGCACATACAGGCAGCAGGACGCCAATG
AGTGCTGGGCGGAGATCCTGAAAATGTTGCAGCAAAAGCTGCGGCCAAAA
AACCAGGAACCCTCGAATACTGTCCAGAAAAGGCACAGCTCGTTTATCGA
CCAGTTTTTTGGTGGCACTTTTGAAGTTAAGATGAGCTCAGAAGAGGATC
CCGATGAACCTTCAACAGTAACAAGCGAAAATTTCTTGCAGTTAAGTTGC
TTCATTTCCATGGATGTGAAGTACATGCAGAGTGGTCTGAAATCTAAAAT
GAAAGAGCAGCTGGTGAAAAAATCAGAAACCCTGGGACGCGATGCAAAGT
ACATTCGACTTACTTGGTGAGCCGACTTTCAGCCTATCTCACCGTACAAT
TCGTGCGCTTTCAATACAAAGGAAGGAGGCATTAAATGCCAAGGTGTTGA
AGGATATTCAAATTCCCATTGACTTCGATGCTTTGGAGTTGTGTTACCCC
GAATTGCAAACAAGCTCTGCCATGCCGTTCGAAGTCAGGATCTGAAAACA
GAAATGCACTGACTTGTCC
FMO08784.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5384-RB | 1632 | CG5384-RB | 85..1164 | 8..1083 | 5100 | 98.6 | Plus |
| CG5384-RA | 1555 | CG5384-RA | 59..1138 | 8..1083 | 5100 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10313306..10313689 | 688..305 | 1920 | 100 | Minus |
| 2L | 23513712 | 2L | 10314063..10314241 | 201..23 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 10313084..10313242 | 845..687 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 10312746..10312908 | 1071..911 | 535 | 91.4 | Minus |
| 2L | 23513712 | 2L | 10313901..10314005 | 305..201 | 525 | 100 | Minus |
| 2L | 23513712 | 2L | 10312965..10313027 | 908..846 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:38:07 has no hits.
FMO08784.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:30:34 Download gff for
FMO08784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5384-RA | 78..1164 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:45 Download gff for
FMO08784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5384-RA | 52..1138 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:27 Download gff for
FMO08784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5384-RA | 52..1138 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:27 Download gff for
FMO08784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10312720..10312908 | 911..1094 | 91 | <- | Minus |
| 2L | 10312962..10313027 | 846..910 | 98 | <- | Minus |
| 2L | 10313084..10313240 | 689..845 | 100 | <- | Minus |
| 2L | 10313306..10313688 | 306..688 | 100 | <- | Minus |
| 2L | 10313901..10314005 | 201..305 | 100 | <- | Minus |
| 2L | 10314064..10314239 | 25..200 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:45 Download gff for
FMO08784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10312720..10312908 | 911..1094 | 91 | <- | Minus |
| arm_2L | 10312962..10313027 | 846..910 | 98 | <- | Minus |
| arm_2L | 10313084..10313240 | 689..845 | 100 | <- | Minus |
| arm_2L | 10313306..10313688 | 306..688 | 100 | <- | Minus |
| arm_2L | 10313901..10314005 | 201..305 | 100 | <- | Minus |
| arm_2L | 10314064..10314239 | 25..200 | 100 | <- | Minus |
