FMO08786.5prime Sequence
1126 bp (990 high quality bases) assembled on 2010-06-29
> FMO08786.5prime
CAGTCGACATGGAACAGTCTCAGTCTCAACGGCAGGCGTGGCCTTCGTCC
TCCGCGGGGGGTGGCAAGGCCCAGGACTCCGGGGTGCTGACGCGCGAGGA
CTTCGACGGCGGACCGGTCAGCATCGACGAGGTGGACACAGGCCTGTTTC
TAGGCAACCTGACCGCGGCGACGCACATGGAGACGCTGCGCTCCTTCAAG
ATCACCCACATCCTCACGCTGGATTCGGTCCCGCTGCCGCAGCACATTCT
GGAGGCCAGCTTTCTGACCACCAAATATATACAGATTGCCGACATGCCGC
GCGAAGATATTCTGCAGCATCTGGAGGGCTGCGTTGACTTTATCAGCTCG
GCCCTGGCCCAGCAGGGCAATGTCCTTGTGCACTGCTACTTCGGCGTCAG
TCGCAGCTCATCCACTGTGATCGCTTACATGATGAAGCGACACAATCTGG
ACTTCCTGCCCGCCTACGAGCTGGTCAAGGCCAAACGGCGCTTCGTCCAG
CCAAACGCTGGCTTTGTCAGCCAACTAAAGCTCTTCCGGCGCATGGGCTG
CAAGATTGACCCCAACTGCCAGCGCTACAAGATCCATCGCCTGCGCCTGG
CTGGCGAGCAGATGCGCAAGGCCAAGATCCTGCCGCAAAGCTTCCACAGC
GTGGTCCGTCCGGATCCAGATATAACGCGCGAGAACCCGGAGCCCATAGT
GTTCCGCTGTCGTCGTTGCCGCCGCGTCCTCGCCTCCAAGTCGCATGTAC
TGGAGCACAAGCCGCGTGACAGGCCGCCGCAGAGGTGGTACCCAAGAGAA
AGAAGAAGTCGCTGCAGCTAAGCTGCCGGCTCAGTCACATGATCAGGCCG
AAAATCATCATGGTGCTCGCATGCTGGAGCAGCTGTCCGAGCGCATCCGC
CAGTCATCACTCGGTTCACCCGGCACGAAAGCACGCCAAACTATTGCGCC
ATCATACTGTTTGTGAGCCCATCGCCTGAATGCCACGCATCATGCTGACA
TCCAGGCCGCTGTACTGTCCCAAGTGCGAGCAAAATTGGAAACTTAGCTG
GATCCACGCCTGCAAGTGTTCGTGCGGGGAGACAATGACGCTGCAATTTT
ATCTGATCTCAGGGGAGCTTCGAAGG
FMO08786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MKP-4-RC | 1815 | CG14211-RC | 83..1192 | 8..1107 | 5105 | 98 | Plus |
| MKP-4-RB | 2358 | CG14211-RB | 96..1205 | 8..1107 | 5105 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19623779..19624433 | 385..1032 | 2825 | 97.6 | Plus |
| X | 23542271 | X | 19623209..19623355 | 8..154 | 735 | 100 | Plus |
| X | 23542271 | X | 19623415..19623548 | 152..285 | 670 | 100 | Plus |
| X | 23542271 | X | 19623615..19623714 | 286..385 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:06 has no hits.
FMO08786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:30:21 Download gff for
FMO08786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14211-RB | 90..1205 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:48 Download gff for
FMO08786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MKP-4-RB | 90..1205 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:32 Download gff for
FMO08786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MKP-4-RB | 90..1205 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:32 Download gff for
FMO08786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19623203..19623354 | 1..153 | 97 | -> | Plus |
| X | 19623417..19623548 | 154..285 | 100 | -> | Plus |
| X | 19623615..19623714 | 286..385 | 100 | -> | Plus |
| X | 19623780..19624462 | 386..1058 | 97 | -> | Plus |
| X | 19624528..19624576 | 1059..1107 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:48 Download gff for
FMO08786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19517236..19517387 | 1..153 | 97 | -> | Plus |
| arm_X | 19517450..19517581 | 154..285 | 100 | -> | Plus |
| arm_X | 19517648..19517747 | 286..385 | 100 | -> | Plus |
| arm_X | 19517813..19518495 | 386..1058 | 97 | -> | Plus |
| arm_X | 19518561..19518609 | 1059..1107 | 92 | | Plus |
