FMO08788.5prime Sequence
1140 bp (1031 high quality bases) assembled on 2010-06-29
> FMO08788.5prime
CAGTCGACATGAACAAGCGCAGCGTCATCATCGCGGGAATCGTGGCCAGC
CTGTTGGGCTTGGCGCTCGGTGCCAACTTCTACTTTATGTACTACCTCAG
CGCCGAGGAGGGTCATCTGGCCAGCGTCCGGGCGCTGGAGAACATGATAC
GGCACAAGATGCGCCACCTAAAACCCAACTACCTCAATCGCAATCCCCGC
TTCTTCATGTTCCGCAACAAGCTGCTTAAGAACTACAAGGCGGCGCCGTA
CGAGAACGCCAGTGTCCTCTGGGACATTGCGAACTGGTGGCCGCACGAAA
ACGAGGTCTATCCCTTATACGACTCATCGATGGGACAGCTTTTAGAAACA
CTGCGCCGCGAACCTATCACCCGGGTGAGCAACCTGGGTCGGGGCACGCA
ACTGAAGCTCCTCGTCCGCCTTTCCCACCAGCAGAAGGTGATCTTTAAGC
CGCAATGGTATCCGCGGGAAGAGGTCATCGATGGCATGATATACAGTGGC
AAGGATCGCCACACGGCGGAAGTATATGCCTTCTATCTGGGCGCCGTGCT
CGACTTTCGATGGACGCCCATAGTGGTGGGTCGAGTGGTGAACCTGAAGA
AGGAGATATATGCCAAAGGCGATCCGGAACTCCAGCAAACCATAAACATC
GAAACGGACGAGGATGGCAGGGAGAAGTACTGCCTGTTCGGGAAGTGTCA
CTACTGCAACGAGGAGGAGACTGTTTGTGGCGATGAGCGGCACAACATTG
AAGGTGTGCTCATATATATTGTTCCGGGTACGTTGGCTAAGCGGCGATCA
CCGTGGCAACGCACCTACAAGGATGACAAGCGGGCGCCCTGGGAGGACGA
TATGACCTATTGCAAATCGTTGAAAAATAAAATGGAGACCATCCGGCCTG
CTGGACCTTATAGATGCGTCTATTTTCGACTACCTAATCCAAAATGGAGA
TCGGCATCACTACGAGACGCGGGAGAGCGCGTGTGCTTATAGACATGGAA
AAGCTTCGAAACCCGAACAAGATCCACTTGGACTATTGCGGCCACTCTAC
CATGCTGCTTCAGGCGAAAGTCACGTGGATCGCCTGCAAGTCTTTCGGCG
GCGTACTCCAGGAAATCATCGAATCGACTATCAAGCAGAA
FMO08788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3631-RE | 2710 | CG3631-RE | 874..2013 | 9..1138 | 5205 | 98 | Plus |
| CG3631-RD | 2705 | CG3631-RD | 869..2008 | 9..1138 | 5205 | 98 | Plus |
| CG3631-RC | 2776 | CG3631-RC | 940..2079 | 9..1138 | 5205 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14880957..14881535 | 287..865 | 2895 | 100 | Plus |
| 3R | 32079331 | 3R | 14880516..14880794 | 9..287 | 1395 | 100 | Plus |
| 3R | 32079331 | 3R | 14881596..14881787 | 866..1052 | 545 | 92.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:54:52 has no hits.
FMO08788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:30:19 Download gff for
FMO08788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3631-RD | 881..2024 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:29 Download gff for
FMO08788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3631-RC | 922..2067 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:57 Download gff for
FMO08788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3631-RC | 936..2081 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:57 Download gff for
FMO08788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14880512..14880794 | 1..287 | 98 | -> | Plus |
| 3R | 14880958..14881535 | 288..865 | 100 | -> | Plus |
| 3R | 14881596..14881796 | 866..1059 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:29 Download gff for
FMO08788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10706234..10706516 | 1..287 | 98 | -> | Plus |
| arm_3R | 10706680..10707257 | 288..865 | 100 | -> | Plus |
| arm_3R | 10707318..10707518 | 866..1059 | 93 | -> | Plus |
