FMO08808.5prime Sequence
1132 bp (981 high quality bases) assembled on 2010-08-03
> FMO08808.5prime
CAGTCGACATGTGTATAGCTCACCTGCCTATCACATTTACTCTCGCCATC
CTGCTCGCAATTGCTTCTAATGAAGGCGCGCAAGGCGTAGAAAGTGCGAC
AAGGACGGCAATTGAAGCTATACGAACAGGAATCGGCACGAAACCGGAAA
CGGAAATTGCGGACGCCACAGAGGCGGAAGCCCCCGTGCGAGAGGTAATA
TCGCTGCTGGGCATAATCGATGGTGCTGAGTCCGATATCCTGGTTCCCGA
CGCCGACGACAAGTGTCCTGGCGGCTATTTCCACTGCAATACAACGGCAC
AGTGTGTTCCACAGCGGGCCAACTGTGACGGCAGTGTCGACTGCGATGAC
GCATCGGATGAGGTGAACTGCGTGAACGAGGTGGACGCCAAGTACTGGGA
TCACCTGTACAGAAAGCAGCCATTCGGGAGACACGATAATCTCAGGATTG
GCGAATGCCTTTGGCCCAACGAAAACTTTTCCTGTCCCTGTCGAGGTGAT
GAAATTCTATGCAGATTTCAGCAGCTAACCGATATTCCAGAACGACTGCC
GCAGCACGATCTGGCAACGCTCGATCTAACGGGAAACAATTTCGAAACCA
TCCACGAAACTTTCTTCAGTGAACTGCCAGACGTCGATAGCTTAGTGCTG
AAGTTCTGCTCAATCCGTGAGATTGCCTCGCATGCATTCGATCGCCTGGC
GGACAACCCACTGAGGACCCTTTATATGGACGATAATAAATTACCGCATC
TGCCGGAACACTTCTTTCCCCGAGGGCAATCAATTTGAGTATTCTCATTT
TGGCACGCAACCACCTGCATCATTTGAAATGAAAGCGATTTTCTCAATCT
ACAGAAGTTACAGGAACTGGACCTTCGCGGCAATCGCATAGAAACTTCGA
AGCCGAGGTCTTTGCCCGACTACCGAATTTGGAGTGCTCTATCTCAATGA
AAACCACTTAAAGCGTCTGGATCAGATAGATTTTCCAGAACCCTGCTCAT
TCTGCACACTTTGTCCTTGGCTTACGATTAGATCGAGGACTCGCCCGCGA
TTCATTCCCCGTTCCAGCTTCGATCTTAATTTCGGCTGGCATCGAATAAT
CCCACAACCAGATGAACATTTTCAAATTCAGC
FMO08808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34411-RB | 2975 | CG34411-RB | 351..1470 | 9..1122 | 5030 | 97.5 | Plus |
| CG34411-RC | 2870 | CG34411-RC | 256..1365 | 19..1122 | 4980 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13172741..13173183 | 459..17 | 2215 | 100 | Minus |
| X | 23542271 | X | 13172507..13172618 | 571..460 | 560 | 100 | Minus |
| X | 23542271 | X | 13167402..13167504 | 1040..939 | 405 | 95.1 | Minus |
| X | 23542271 | X | 13170258..13170335 | 721..644 | 390 | 100 | Minus |
| X | 23542271 | X | 13172313..13172384 | 643..572 | 360 | 100 | Minus |
| X | 23542271 | X | 13167721..13167793 | 869..796 | 290 | 95.9 | Minus |
| X | 23542271 | X | 13167584..13167650 | 934..869 | 285 | 98.5 | Minus |
| X | 23542271 | X | 13170029..13170091 | 785..722 | 270 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:55 has no hits.
FMO08808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:15 Download gff for
FMO08808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34411-RB | 343..1409 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:54 Download gff for
FMO08808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34411-RB | 343..1409 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:31 Download gff for
FMO08808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34411-RB | 343..1409 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:31 Download gff for
FMO08808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13172507..13172618 | 460..571 | 100 | <- | Minus |
| X | 13170020..13170091 | 722..795 | 97 | <- | Minus |
| X | 13170258..13170335 | 644..721 | 100 | <- | Minus |
| X | 13172313..13172384 | 572..643 | 100 | <- | Minus |
| X | 13167402..13167504 | 939..1040 | 95 | <- | Minus |
| X | 13167579..13167650 | 869..938 | 97 | <- | Minus |
| X | 13167722..13167793 | 796..868 | 95 | <- | Minus |
| X | 13172741..13173190 | 8..459 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:54 Download gff for
FMO08808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13064053..13064124 | 722..795 | 97 | <- | Minus |
| arm_X | 13064291..13064368 | 644..721 | 100 | <- | Minus |
| arm_X | 13066346..13066417 | 572..643 | 100 | <- | Minus |
| arm_X | 13066540..13066651 | 460..571 | 100 | <- | Minus |
| arm_X | 13061435..13061537 | 939..1040 | 95 | <- | Minus |
| arm_X | 13061612..13061683 | 869..938 | 97 | <- | Minus |
| arm_X | 13061755..13061826 | 796..868 | 95 | <- | Minus |
| arm_X | 13066774..13067223 | 8..459 | 99 | | Minus |
