FMO08812.5prime Sequence
708 bp (-14 high quality bases) assembled on 2010-08-03
> FMO08812.5prime
CAATCCACATGGCAGCCAGTAAGTCCCAGATCGAGGAGCTGTACAACTTT
ATCTATCCGCTCGCAATGAGAGCTGGGGAAATCCTGTTGGAAGGCTATCA
AAATGCCGGAAAGGCGGTGGCCCTCAAGGACGGGGAGTTCTATAATGTAA
TCACTGCCTATGATAACCATATAGAGGAGTTTCTCGTGGAGAAAATACTG
GCGCGCTACCCGGATCACAAATTCTTTGGGGAAGAGGATACCCACGACAA
TGACTATGTAACGAAAGATCTGAATGATGCTCCTACTTGGATCATAGATC
CCATCGATGGAACCTCAAACTTTTTCAAACAAATTCCACATGTCTCGGTT
TCAATTGGATTGTCCTTTAACAAACATATCCTGCTGGGTGTACTTAACAA
TCCCATACACAATAAGGTATATACCGCGAATTTGGGCCTTGGTGCCTTTT
GCAATGGGAAACCAATTCAAGTGAGCAGCTGGGAACATCTCACCGATGCT
AATGTGGCTTACGACGTTTGCTTGCTGCACACTCCAAATATCCGGAACAA
GCACATCAAAAGAAGCTACCATGTGGGATCCAATGCCAGAAGACTCCTGG
CATATTCCGCTGTAGTGGATTCCCTTTGCATGGTTGCCATAGGCAACTTG
GATGCCTTTCATATTGAATACATGTTTCCCTGGGATTGGGCGCTGGCTAT
TTCTCATT
FMO08812.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17026-RA | 1004 | CG17026-RA | 91..791 | 9..707 | 2825 | 93.7 | Plus |
| CG17027-RB | 1558 | CG17027-RB | 295..950 | 30..688 | 615 | 73.9 | Plus |
| CG17027-RA | 1362 | CG17027-RA | 99..754 | 30..688 | 615 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15975458..15976041 | 9..592 | 2380 | 93.8 | Plus |
| 3L | 28110227 | 3L | 15980512..15980951 | 151..590 | 460 | 73.6 | Plus |
| 3L | 28110227 | 3L | 15976097..15976209 | 591..702 | 425 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:31 has no hits.
FMO08812.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:21 Download gff for
FMO08812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17026-RA | 1..701 | 9..708 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:17 Download gff for
FMO08812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17026-RA | 91..791 | 9..708 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:07 Download gff for
FMO08812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17026-RA | 91..791 | 9..708 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:07 Download gff for
FMO08812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15976099..15976215 | 593..708 | 92 | | Plus |
| 3L | 15975458..15976041 | 9..592 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:17 Download gff for
FMO08812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15968558..15969141 | 9..592 | 93 | -> | Plus |
| arm_3L | 15969199..15969315 | 593..708 | 92 | | Plus |
