FMO08818.5prime Sequence
1167 bp (1006 high quality bases) assembled on 2010-08-03
> FMO08818.5prime
CAGTCGACATGCAGTCCCCCAACCAAACACAAGCCCATCTCCAGCAGCAG
CACCATCAGCAGCAGCAGCAACAACATCAGCAACACCAGCAGCAGCAACT
GCAGCAGCAGCAGCAGCAACATCACCACAATCAACACCAGCACCACAACT
CCAGCAGCAGCAGTCCGGGGCCAGCGGGTCTGCACCACTCGAGCTCCTCG
GCGGCCACGGCGGCAGCGGTGGCTGCGGCAACGGCGGCGGTCAATGGACA
CAACAGCTCCTTGGAGGACGGCTACGGATCGCCAAGGAGCAGCCACAGTG
GCGGCGGGGGCGGTGGTACTCTGCCAGCCTTCCAGCGGATCGCATACCCC
AACAGTGGCTCCGTGGAACGTTACGCTCCGATAACCAATTATCGCGGTCA
GAACGATACCTGGTTCGATCCGTTAAGCTACGCCACCTCCTCTTCCGGGC
AGGCGCAGTTGGGCGTCGGTGTTGGAGCCGGAGTGGTCTCGAATGTGATA
CGGAATGGGCGGGCCATTTCGGCTGCTAATGCAGCAGCTGCAGCCGCCGC
GGATGGAACCACTGGACGCGTAGATCCTGGAACCTTTCTCTCCGCCTCGG
CATCGTTGTCAGCAATGGCCGCTGAATCAGGCGGGGATTTCTATAAACCC
AACTCATTTAATGTGGGCGGCGGTGGCCGTAGTAAGGCTAACACGAGTGG
TGCCGCCAGCTCCTACTCCTGTCCAGGCTCGAATGCAACCTCGGCGGCGA
CTTCGGCGGTGGCGTCGGGAACGGCAGCAACTGCAGCGACGACGCTCGAC
GAGCACGTTAGTCGCGCCAATTCGAGACGCTTGAGCGCCTCAAAGCGAGC
CGGACTTTCCTGCTCCAACTGCCACACCACCCACACTTCGTTGTGGCGCC
GCAATCCCGCCGGAGAGCCCGTCTGCATGCATGCGCCTGTACTATTAGCT
CCACAGTTGTTCCACGGCCACTGACAATGTAAAAGACACCATTCGAACGC
CAGCCGCAAGCCGATAAGACCGAAGAGCCGAGAAGTCCAGTCAAGTCAAG
AACGCTTTGAATGCCATCATGGAAGTGTTCATTGGTGACCATTGCCATAC
GTGGTGTCGCCTGTAAAGCAGCCGAATGGTGAGTCATGACCAATTGAAAC
TAGCTCTGATCTGAACC
FMO08818.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srp-RG | 3377 | CG3992-RG | 1022..2148 | 8..1123 | 5075 | 97.6 | Plus |
| srp-RF | 3274 | CG3992-RF | 455..1581 | 8..1123 | 5075 | 97.6 | Plus |
| srp-RD | 3841 | CG3992-RD | 1022..2148 | 8..1123 | 5075 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15999380..15999773 | 8..401 | 1970 | 100 | Plus |
| 3R | 32079331 | 3R | 16001189..16001406 | 616..833 | 1090 | 100 | Plus |
| 3R | 32079331 | 3R | 15999843..16000059 | 399..615 | 1085 | 100 | Plus |
| 3R | 32079331 | 3R | 16001751..16001904 | 833..985 | 565 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:24 has no hits.
FMO08818.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:10 Download gff for
FMO08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 965..2105 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:14 Download gff for
FMO08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 1014..2154 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:03 Download gff for
FMO08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srp-RD | 1014..2154 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:03 Download gff for
FMO08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15999846..16000059 | 402..615 | 100 | -> | Plus |
| 3R | 16001189..16001406 | 616..833 | 100 | -> | Plus |
| 3R | 16001752..16001916 | 834..995 | 94 | -> | Plus |
| 3R | 15999372..15999773 | 1..401 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:14 Download gff for
FMO08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11825094..11825495 | 1..401 | 99 | -> | Plus |
| arm_3R | 11825568..11825781 | 402..615 | 100 | -> | Plus |
| arm_3R | 11826911..11827128 | 616..833 | 100 | -> | Plus |
| arm_3R | 11827474..11827638 | 834..995 | 94 | -> | Plus |
