FMO08821.5prime Sequence
1168 bp (764 high quality bases) assembled on 2010-08-03
> FMO08821.5prime
CAGTCGACATGACCAATTCGGGACGCAATCATCATCGATTCGATCAAACA
TTCCTAGGCGCCACCGAACTGGACGATGAGTTAATCAAACAACTGCCAAA
GGAGGTACTGCTGCGCGTCTTCTCCTACCTGGATGTTGTCTCACTATGCC
GCTGTGCACAGGTATGCAAATATTGGAACGTGCTGGCCCTCGACGGTTCC
AGCTGGCAGAAAATCAATCTATTCGACTTTCAACGTGATATCGAGGGTCC
AGTGATTGAGAATATATCGCAGCGATGTCGCGGTTTTCTCAAGTCACTGT
CGCTGCGTGGCTGCCAATCGGTGGGAGATCAGTCCGTGAGAACTCTATCG
AACCACTGCCACAATATCGAGCACTTAGATCTGTCGGATTGCAAGAAGAT
AACCGATATATCCACACAGTCCATCAGCAGGTATTGCTCCAAGCTAACGG
CCATTAATTTGCACTCGTGCTCCAACATAACAGACAACAGCTTGAATTAC
TTATCCGATGGCTGTCCAAATCTCATGGAGATCAACGTGTCCTGGTGCCA
CCTGATCTCCGAGAATGGTGTGGAGGCGCTGGCTCGTGGCTGCGTCAAGC
TGCTCAAATTCATCATTAAATGTTGTAAACAAATAAACGACAATGCCTTA
ATGTGCCTGGCCAATACTGTCCCGATTTAATGGTGCTAATCTACACAGCT
GCGAGACCATAACCGATTCATCGATTCGCCAACTGGCCGCCAATTGCCAT
AGCTGCAAAATTGTGCGTGTCCAAGTGCGCGGACCTCACCGATCTCACTC
TGTTGTCCCTCTCGCAACACAATCATCTACTGAAACACCCTGGAGGTATC
CGGGGGGTCGCAACTTCCGGGACATTTGTCTTTCCAGCGCTGGGGCGAAC
CTGCCAGTATCTGGAGCGATGGACTCTGGAGGAATGCAGCCCAATGTTAA
ACTAAACGTTGGCTCATCTTGGCCACTGGGCTGGTCCCACTTAAAATAAA
TTGGACCTTATCGCACTGTTAACTGATTATGGACGAAATGGATTTCAAAC
CCTTCCCACTGTATGCTGGTGCCTGCCGAAAATTCTGTCCGTGGCGGTAA
ATTAAACAAACTGTACCCCATGAATAACCGAACGATACCTTAAATCATTT
GTGGGGTTCCTGGCTCAA
FMO08821.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9003-RG | 3693 | CG9003-RG | 668..1744 | 9..1093 | 4305 | 94.2 | Plus |
| CG9003-RF | 2885 | CG9003-RF | 651..1727 | 9..1093 | 4305 | 94.2 | Plus |
| CG9003-RE | 2885 | CG9003-RE | 651..1727 | 9..1093 | 4305 | 94.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11644239..11644418 | 518..339 | 870 | 98.9 | Minus |
| 2R | 25286936 | 2R | 11643991..11644179 | 705..519 | 770 | 96.3 | Minus |
| 2R | 25286936 | 2R | 11643662..11643928 | 971..704 | 710 | 88.5 | Minus |
| 2R | 25286936 | 2R | 11644845..11644964 | 164..45 | 600 | 100 | Minus |
| 2R | 25286936 | 2R | 11644485..11644581 | 340..244 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 11644680..11644769 | 246..157 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:35 has no hits.
FMO08821.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:09 Download gff for
FMO08821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9003-RD | 666..1637 | 1..971 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:41 Download gff for
FMO08821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9003-RE | 643..1614 | 1..971 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:22 Download gff for
FMO08821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9003-RE | 643..1614 | 1..971 | 95 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:22 Download gff for
FMO08821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11643991..11644179 | 519..705 | 96 | <- | Minus |
| 2R | 11644239..11644416 | 341..518 | 98 | <- | Minus |
| 2R | 11644485..11644579 | 246..340 | 100 | <- | Minus |
| 2R | 11644681..11644764 | 162..245 | 100 | <- | Minus |
| 2R | 11644848..11644964 | 45..161 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:41 Download gff for
FMO08821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7531496..7531684 | 519..705 | 96 | <- | Minus |
| arm_2R | 7531744..7531921 | 341..518 | 98 | <- | Minus |
| arm_2R | 7531990..7532084 | 246..340 | 100 | <- | Minus |
| arm_2R | 7532186..7532269 | 162..245 | 100 | <- | Minus |
| arm_2R | 7532353..7532469 | 45..161 | 100 | <- | Minus |
