FMO08823.5prime Sequence
680 bp (325 high quality bases) assembled on 2010-08-03
> FMO08823.5prime
CAGTCGACATGACCGAAAATAAAGGCATAATGCTGGCCAAATCTGTTCAA
AAACACGCTGGACGTGCCAAGGAGAAGATTCTACAAAACTTGGGCAAAGT
CGATCGCACTGCGGATGAAATCTTCGACGATCACCTGAACAACTTCAATC
GCCAGCAGGCGAGTGCCAACAGATTACAAAAGGAGTTCAATTACTACATA
AGATGTGTTCGCGCCGCACAAGCCGCCTCCAAGACTCTGATGGATTCCGT
TTGCGAGATCTACAAGCCACAATGGAGCGGTTACGATGCCCTGCATGCAC
AAACGGGTGCCTCGGAAAGTCTGTGGGCGGACTTTGCGCACAAATTGGGG
GATCAAGTCCTCATTCCGCTCAACACATACACTGGACAGTTTCCTGAAAT
GAAGAAAAAAGTAGAGAAGCGCAACCGAAAGCTGATTGATTACGATGGCC
AACGACACTCGTTTCATAATCTGCAGGCCAATGCCAACAAGCTCAAAGAT
GATGTCTTACTAACCAAAGGACGCGAGCAGTTGGAGGAAGCTAGACGCAC
CTACTAAATCCTTAACACGGAACTGCATGACGAGCTGCCCGCCTTGTATG
ACTCTATGATACTGTTTCTGGTCACCAACTTGCAGACACTCTTCGCCACA
GAGCAAGTGTTCCACTAACGAAACGGCTTA
FMO08823.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amph-RC | 2497 | CG8604-RC | 397..1065 | 9..678 | 3145 | 98.1 | Plus |
| Amph-RB | 2884 | CG8604-RB | 397..1065 | 9..678 | 3145 | 98.1 | Plus |
| Amph-RA | 3184 | CG8604-RA | 397..1065 | 9..678 | 3145 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12607123..12607314 | 213..404 | 915 | 98.4 | Plus |
| 2R | 25286936 | 2R | 12607544..12607711 | 510..678 | 735 | 97 | Plus |
| 2R | 25286936 | 2R | 12606913..12607050 | 76..213 | 675 | 99.3 | Plus |
| 2R | 25286936 | 2R | 12607376..12607479 | 403..506 | 490 | 98.1 | Plus |
| 2R | 25286936 | 2R | 12594000..12594068 | 9..77 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:58:12 has no hits.
FMO08823.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:13 Download gff for
FMO08823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amph-RA | 411..1086 | 1..679 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:27 Download gff for
FMO08823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amph-RA | 390..1065 | 1..679 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:31 Download gff for
FMO08823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amph-RA | 390..1065 | 1..679 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:31 Download gff for
FMO08823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12593993..12594068 | 1..77 | 94 | -> | Plus |
| 2R | 12606915..12607050 | 78..213 | 99 | -> | Plus |
| 2R | 12607124..12607314 | 214..404 | 98 | -> | Plus |
| 2R | 12607378..12607482 | 405..509 | 96 | -> | Plus |
| 2R | 12607544..12607711 | 510..679 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:27 Download gff for
FMO08823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8481498..8481573 | 1..77 | 94 | -> | Plus |
| arm_2R | 8494420..8494555 | 78..213 | 99 | -> | Plus |
| arm_2R | 8494629..8494819 | 214..404 | 98 | -> | Plus |
| arm_2R | 8494883..8494987 | 405..509 | 96 | -> | Plus |
| arm_2R | 8495049..8495216 | 510..679 | 96 | | Plus |
