FMO08827.5prime Sequence
551 bp (-89 high quality bases) assembled on 2010-08-03
> FMO08827.5prime
CAGTCGACTTGATGTCCTGCCCCATTCCCATGCCAATGCCAATTTCTTCA
TTACACAAATCAGAATTTGAACTGGTTAATATTGGAGTTAAGCAAATGCA
ATTGTTGCACGCACCGGCGTCCACGCATCCGCATCCACATCCGCATCAGC
ATCCGCAGCATTCGGCAGCGTCAGCCGCCGCCTATCAGGCCATGCAGGTG
CACCAGCAGCAACACCAACAGCAACAGCAGGCGGCCGTCTTTCACCACCA
GGTTGCAGCCATTGCCGCCCAGCAACAACAACAGCAACAGCAGGCCCATG
TGCAACATCAGCAACAAATGCAGCAGCAGTTCCACTACCAAGCCCAGGCT
CAAGCTCAAGCGCAGGCCATGCTGCAGACGTATATGCAATTTCAGGTGAA
CAGTGCTGTAGGTGTGAGCACCGCCCCCGCCACTCTTATTTTAACCGGTA
GCCGCCCAGATTCTGGGCGCGATCTCCTGACTGATTGCGGGTCCGGATCC
TGTATTGTTCCGACACAGTTCTTCACGGCGCCAATACTCCATTGACCATC
A
FMO08827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| heph-RY | 3869 | CG31000-RY | 339..881 | 10..551 | 2390 | 96.3 | Plus |
| heph-RW | 3651 | CG31000-RW | 418..960 | 10..551 | 2390 | 96.3 | Plus |
| heph-RR | 3496 | CG31000-RR | 293..835 | 10..551 | 2390 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31932155..31932616 | 551..91 | 1925 | 95.9 | Minus |
| 3R | 32079331 | 3R | 31959035..31959117 | 92..10 | 400 | 98.8 | Minus |
Blast to na_te.dros performed 2014-11-28 21:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6670..6963 | 81..381 | 299 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2548 | 125..343 | 267 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6882 | 195..352 | 257 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6942 | 126..340 | 257 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2442 | 201..327 | 251 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2438..2713 | 125..402 | 233 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6894 | 151..328 | 233 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2494 | 139..340 | 213 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6952 | 91..311 | 190 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2977 | 201..364 | 185 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6898 | 91..230 | 180 | 62.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3218..3381 | 128..289 | 175 | 62.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1043..1141 | 133..230 | 167 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1163 | 173..291 | 164 | 63.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1045..1152 | 120..229 | 157 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1645 | 201..289 | 154 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1163 | 125..228 | 153 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2384..2539 | 125..289 | 145 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2845..2989 | 91..229 | 143 | 59.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1120 | 194..230 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2662 | 163..229 | 121 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7332..7431 | 133..238 | 109 | 61.3 | Plus |
FMO08827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:03 Download gff for
FMO08827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RR | 284..834 | 1..550 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:40 Download gff for
FMO08827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RR | 284..834 | 1..550 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:17 Download gff for
FMO08827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RR | 284..834 | 1..550 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:17 Download gff for
FMO08827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31932156..31932614 | 93..550 | 95 | <- | Minus |
| 3R | 31959035..31959125 | 1..92 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:40 Download gff for
FMO08827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27757878..27758336 | 93..550 | 95 | <- | Minus |
| arm_3R | 27784757..27784847 | 1..92 | 94 | | Minus |
