FMO08828.5prime Sequence
1028 bp (759 high quality bases) assembled on 2010-08-03
> FMO08828.5prime
CAGTCGACATGTGCGACTTTGACGCTTTGTGGGCGGATGTACTGAGAATC
TTTCCGGTTTTGGGTGGAGCGAACGCTGTATCCAATGATCCGGTTGAGGA
GAATGTATTCCAAAATGTTCGCCAGCACCTGATGGTGTTGGGCAGCATAT
ACACCTTCGCGGCGGTTGTGGACCTGGAAATCCAGTCGACTATTCGGAAT
GTCCTGGTGCCCAAGTTCTGGAAGCACATCCACAACGGCTTGGTCTCGTC
TAAATTGCAGGGCTGGATTAACAACCAAGCTCTGGCCATAGAAGCACTGC
CCGATAAGAACGGACTGTTCACCCAGTTCATCGACGCCATCAATGAGCTG
CATGACAGCTTTCAGAGCCTGATGCAGGTGAAGCCCATGCTGATCCAGCT
AGTTGGAGCTGAGACAAAGCCCACCGCAAAGACGGTGAATCTCATGCAGG
AGGAAGGCATTAAGAACTGCTTAAGGGACTGCTTGCTGGCTCAACTGCCA
CCCAATTTCAGTGTGGTCGTTGGGGCCTTCTACTGGGTGCACTTTAAGCT
CTTCACCAAGGCCTCAAATCTCGCATTGACCACAGTTGACTCTGATGTTT
TCGATGAGCTCCTCTGCGTTGGCTGCATCTTCGAATCATAGCAATGCTGC
TGCCAAATGCTGACGGATATGGTTAACAAGACAAACATGAAGCTCTTCGA
GATGAACCTCATTGACCGTCTAACTGGGAGTGCTTTAACCGCTCTCATCA
AGCTTAAAATCAAGGAGCACATCAACGATACATGCATGGGAATCTTCGAC
AAAGTCATCTTAAGCAACTGTGAAATTTGGCTATCGGATGTCATAATGTC
CTGGCTCCACATCATATTCACGGAATGGAAGTCTAATGATAGCTTAAGCT
ATACCAAGTCCCGAGTCAGTAAAACTCTCCAAAGATAATTGGACTTACTT
TAGTACAAAACTTCCCAAACAGTGATTGGCAGCTCTTCACCTTTTTATTG
ATATCCCACTTCCTTTCTGGGTTAATGA
FMO08828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mr-RA | 2555 | CG3060-RA | 79..1096 | 9..1017 | 4245 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23972632..23973149 | 71..588 | 2515 | 99 | Plus |
| 2R | 25286936 | 2R | 23973205..23973438 | 588..820 | 1045 | 97.4 | Plus |
| 2R | 25286936 | 2R | 23972509..23972571 | 9..71 | 315 | 100 | Plus |
| 2R | 25286936 | 2R | 23973520..23973646 | 828..952 | 285 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:24 has no hits.
FMO08828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:02 Download gff for
FMO08828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mr-RA | 71..987 | 1..917 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:37 Download gff for
FMO08828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mr-RA | 73..989 | 1..917 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:56 Download gff for
FMO08828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mr-RA | 73..989 | 1..917 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:56 Download gff for
FMO08828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23973206..23973444 | 589..827 | 96 | -> | Plus |
| 2R | 23972503..23972571 | 1..71 | 94 | -> | Plus |
| 2R | 23972633..23973149 | 72..588 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:37 Download gff for
FMO08828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19860026..19860094 | 1..71 | 94 | -> | Plus |
| arm_2R | 19860156..19860672 | 72..588 | 99 | -> | Plus |
| arm_2R | 19860729..19860967 | 589..827 | 96 | -> | Plus |
