FMO08831.5prime Sequence
1143 bp (1023 high quality bases) assembled on 2010-08-03
> FMO08831.5prime
CAGTCGACATGGCGGATGCCGCAGCACGTCAGCTGCAATACGAGTACAAG
GCGAACTCCAATCTTGTGCTGCAAGCCGATGTCCGACTCATCGAACGTCC
GCGCCGCGATGAGGCCACTGGCGAGGTGTGTTCCCTGGTGGGAAAGCTGG
ACGGAACAAGGATGGGAGATCGGTACCAGCGAACGAAGCCGGAGAAAACG
GAGGAGCGCAAGGTGAAACGTCAGAAGCGCGACGAGGCCCAGTACGATTT
CGAGCGGATGAAGGGAGCCACTCTGCTCTCCGAGGGCATTGACGAGATGG
TGGGCATTGTGTATCGACCCAAGACCCAGGAAACTCGTCAGACCTACGAG
GTCCTGCTCAGTTTCATCCAGGAGGCTCTGGGGGATCAGCCCAGGGATAT
CCTGTGCGGTGCCGCTGATGAGATTCTGGCTGTCCTCAAGAACGATCGTT
TAAAGGATCGGGAGCGAAAGAAGGATATAGACAGCTTGCTGGGCGCAGTT
ACAGATGAGCGATTCGCTCTGCTGGTTAACCTGGGCAAAAAAATCACAGA
CTTTGGCAGCGATGCCGTGAATGCTTTGACTGCTGCTCCCAACAACGAGG
AGCAGATCGATGAAACCTACGGCATCAATGTTCAGTTTGAGGAATCCGAA
GAGGAGAGCGACAACGACATGTATGGCGAGATTCGCGACGATGATGCCCA
GGATGAAGGAGAGGAGGCCCGCATTGATCACACACTGCATGCAGAGAATC
TAGCCAACGAGGAAGCCGCAAATAATGTAAAGAAAGAGCGCTCCTTGCAT
CCTCTGGACATAGATGCGTATTGGTTGCAGCGTTGTCTGAGCAAGTTCTA
CAAAGACGCCATGGTGTCGCAAAGCAAAGCCGCCGATGTGTTGAAGATCC
TCAAAGATGCCGCCGACGATCGCGATTGCGAAAATCAATTGGTGCTTCTG
CTGGGCTACGATTGCTTTGACTTCATTAAGCAAATGAGCTAAACAGGCAG
ATGGTCCTGTATTGCACATGCTCCGCCCGGCCCAACCGACAGCGAGCGCA
AAGGATTCGCGAGATGATGCGCGGAAATCTGGTTGGCCAATCTTCGGCAT
TGGTTCGCAGCAGGATCAGGAGAGGGCAACACGGTAACACTGT
FMO08831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Ab-RA | 6707 | CG5931-RA | 118..1208 | 6..1090 | 5155 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15966916..15967612 | 749..53 | 3485 | 100 | Minus |
| 3L | 28110227 | 3L | 15966526..15966858 | 1078..750 | 1315 | 95.8 | Minus |
| 3L | 28110227 | 3L | 15967708..15967755 | 53..6 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:28:13 has no hits.
FMO08831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:59 Download gff for
FMO08831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5931-RA | 100..1204 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:59 Download gff for
FMO08831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Ab-RA | 116..1220 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:10 Download gff for
FMO08831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Ab-RA | 116..1220 | 1..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:10 Download gff for
FMO08831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15966500..15966858 | 750..1099 | 95 | <- | Minus |
| 3L | 15966916..15967611 | 54..749 | 100 | <- | Minus |
| 3L | 15967708..15967757 | 1..53 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:59 Download gff for
FMO08831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15959600..15959958 | 750..1099 | 95 | <- | Minus |
| arm_3L | 15960016..15960711 | 54..749 | 100 | <- | Minus |
| arm_3L | 15960808..15960857 | 1..53 | 94 | | Minus |
