FMO08833.5prime Sequence
1048 bp (943 high quality bases) assembled on 2010-08-03
> FMO08833.5prime
CAGTCGACATGTCTGGAAGAGGAAATTTGTTGAGCTTATTTAATAAAAAT
GCTGGCAATATGGGAAAATCAATTTCAAGTAAAGATCATGAAATCGACAG
TGGCTTGGATTTTAACAACTCTGAATCAAGTGGAGAACGTTTACTGTCAA
GCCATAATATTGAAACTGATCTTATAACCACTCTTCAACATGTAAACATC
TCGGTCGGCCGAGGACGTGCTAGGCTTATAGACACATTAAAAACAGATGA
CCATACATCAAATCAATTTATAACATCTGAATCAAAGGAAAACATTACCA
AAAAGACAAAGGGCCCCGAATCGGAAGCAATTGCTTCAGAAAATGGATTA
TTTTTTCCCGATTTAATTTACGGATCTAAAGGTTCATCTGTTAATATATA
TTGTAATTACTTAAAGCTAACGACGGATGAATCCAAGGGAGTTTTTAATT
ACGAAGTGCGTTTTTTTCCTCCCTTTGACTCTGTTCATTTAAGAATAAAA
TATTTAAATGATCATAAGGATAAACTCGGTGGAACCAAGACATTTGACGG
AAATACTTTATATTTACCTATTTTGTTACCAAATAAGATGACCGTCTTTA
TTTCAAAGGCGGAAGATGTTGAGTTGCAGATTCGCATTTTTATACAAAAA
AAAAAGAGGAAAATGAGGAACTGCACGCAATTATATAATATTTTTATTCG
ATAGAGTTATGAAAGTATTGAATTACGTAAAATTTGATCGCAAGCAGTTT
GATCCTTCGCGTCCAAAAATAATACCACTGGCAAAGTTAGAAGTTGGCCT
GCTATGTTACAGCCGTTGACGATACAAGTGGGTTTAATGCTATGCTGCGA
CGTTTCGCATCGAATACTTTGCAAAAAACTGTTCTAGAAATGCTGGTTGA
TCTGTATCAGCAAATGTAAAGCAATTACAAGAATCAGAAAAAAATGTTGG
GTGGAAATATTTGTCGTAACTAGGATAACAAGCGTACTATAAAATAATTG
GACCTTTGGTTTGGACTAAATCCATATGTTGGTTGAATTTAAATTGGT
FMO08833.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AGO3-RG | 2728 | CG40300-RG | 127..1147 | 8..1024 | 4465 | 96.8 | Plus |
| AGO3-RF | 2773 | CG40300-RF | 100..1120 | 8..1024 | 4465 | 96.8 | Plus |
| AGO3-RE | 2974 | CG40300-RE | 301..1321 | 8..1024 | 4465 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23568545..23569167 | 380..997 | 2230 | 95.5 | Plus |
| 3L | 28110227 | 3L | 23566841..23567216 | 8..383 | 1880 | 100 | Plus |
| 3L | 28110227 | 3L | 23626536..23626903 | 383..8 | 1725 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:51 has no hits.
FMO08833.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:57 Download gff for
FMO08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO3-RF | 78..1087 | 8..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:40 Download gff for
FMO08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO3-RE | 298..1310 | 1..1013 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:48 Download gff for
FMO08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO3-RE | 298..1310 | 1..1013 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:48 Download gff for
FMO08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23566836..23567214 | 1..381 | 99 | -> | Plus |
| 3L | 23568547..23569182 | 382..1013 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:40 Download gff for
FMO08833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23559936..23560314 | 1..381 | 99 | -> | Plus |
| arm_3L | 23561647..23562282 | 382..1013 | 95 | | Plus |
