FMO08834.5prime Sequence
473 bp (473 high quality bases) assembled on 2010-08-03
> FMO08834.5prime
CAGTCGACATGGCCGATCAGCTGACAGAGGAACAGATCGCCGAGTTCAAA
GAGGCATTCTCGCTATTCGACAAAGACGGCGATGGCACCATCACAACAAA
GGAGTTGGGCACAGTTATGCGCTCCCTGGGCCAGAATCCCACAGAGGCCG
AGCTGCAGGACATGATCAACGAGGTTGATGCCGACGGCAACGGCACAATT
GACTTCCCTGAATTCCTTACCATGATGGCACGCAAAATGAAGGACACCGA
TAGCGAAGAGGAGATCCGAGAAGCCTTCAGAGTGTTCGACAAGGATGGCA
ACGGCTTCATCTCGGCGGCCGAGTTGCGTCACGTGATGACAAATCTGGGC
GAGAAACTCACAGACGAGGAGGTCGATGAGATGATCCGGGAGGCTGATAT
CGATGGCGACGGTCAGGTCAATTACGAAGAATTCGTGACTATGATGACAT
CGAAGGCAAGCTTTCTAGACCAT
FMO08834.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cam-RD | 3406 | CG8472-RD | 130..576 | 9..455 | 2235 | 100 | Plus |
| Cam-RC | 5672 | CG8472-RC | 208..654 | 9..455 | 2235 | 100 | Plus |
| Cam-RE | 1435 | CG8472-RE | 155..601 | 9..455 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12269192..12269435 | 186..429 | 1220 | 100 | Plus |
| 2R | 25286936 | 2R | 12264742..12264918 | 11..187 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 25812965..25813068 | 333..436 | 235 | 81.7 | Plus |
| X | 23542271 | X | 5619953..5620044 | 376..285 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:58 has no hits.
FMO08834.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:08 Download gff for
FMO08834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cam-RA | 198..653 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:18 Download gff for
FMO08834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cam-RB | 110..569 | 1..464 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:24 Download gff for
FMO08834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cam-RE | 155..610 | 9..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:24 Download gff for
FMO08834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12264734..12264917 | 1..186 | 97 | -> | Plus |
| 2R | 12269193..12269435 | 187..429 | 100 | -> | Plus |
| 2R | 12273766..12273800 | 430..464 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:18 Download gff for
FMO08834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8152239..8152422 | 1..186 | 97 | -> | Plus |
| arm_2R | 8156698..8156940 | 187..429 | 100 | -> | Plus |
| arm_2R | 8161271..8161305 | 430..464 | 91 | | Plus |
