Clone FMO08835 Report

Search the DGRC for FMO08835

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:88
Well:35
Vector:pMK33-CFH-BD
Associated Gene/Transcriptpum-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08835.5prime Sequence

994 bp (916 high quality bases) assembled on 2010-08-03

> FMO08835.5prime
CAGTCGACATGGTGGTTTTAGAAACTGCCAGCGCCCTTTTGGGCGGCCCG
TATGCCCAGGGCGCTCCCGCCCTGAAAATGGTGCAGAAACGCTACATTGG
ATTACATCACTGGCTGGGACCAATCCGCTCCAAGGAGCTAAAGGAGCATA
TTGTAAGTGACGACGTGCTTTCGCTCGCTTTTAACCACAATCAACAACTG
TTTCGCTCGCAGAATCCGGGCCTAGCAGCAGTTGCCACAAATGCAGCGGC
CGCAGCAGCAGCCGCAGCAGCTGCCACATCGGCAGCGAGTGCTGCGGCAG
CGGTGGGCGCACCACCCGTTCCCAACGGATCGCTGCAGCAGTCGCAGCAG
CAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGATGCACATGGC
GGCCGCGTCGCAACAATTTTTGGCCGCCCAGCATCAGGCGCAAAATGCGG
CCTATGCCGCCCAACAGGCCACGTCCTACGTCATCAATCCGGGCCAGGAG
GCTGCCCCGTATATGGGCATGATTGCCGCCGCCCAGATGCCGTACTATGG
CGTAGCACCATGGGGCATGTATCCGGGCAATCTGATTCCGCAACAGGGAA
CGCAGCCGCGCCGCCCCCTCACCCCCTCGCAGCAGGGTGCCGAGAATCAG
CCGTATCAGGTCATCCCGGCATTCCTCGATCACACGGGCTCCTTGCTGAT
GGGAGGACCTCGCACCGGGACGCCGATGCGTCTGGTTAGCCCCGCCCCCG
TTCTGGTGCCCCCGGGCGCTACCCGTGCCGGCCCCCGCCCCCGCAGGGCC
CACAGCTGTATCACCGCAGCCGCAGACGGCCCAACAGAATCTCTACTCGC
AGCAAATGGATCCAGTGTCGGAGCCTCGCCTGAACACGAGCTCCGTGACG
GTCGCGCGACTCCTCGACCGCACACTCGACTTCAGTCCCTCGACCATGAC
TACACAACAGCGAGTTGCAGCTGCCGCCATGCCGTGAACTGTAC

FMO08835.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
pum-RE 4685 CG9755-RE 690..1685 9..989 4455 97.5 Plus
pum-RG 10223 CG9755-RG 2996..3809 191..989 3530 96.8 Plus
pum-RB 7473 CG9755-RB 1481..2294 191..989 3530 96.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9080556..9081022 661..195 2320 99.8 Minus
3R 32079331 3R 9079745..9079964 873..657 935 98.2 Minus
3R 32079331 3R 9157111..9157261 159..9 755 100 Minus
3R 32079331 3R 9098696..9098737 194..153 210 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:43:24 has no hits.

FMO08835.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:07 Download gff for FMO08835.5prime
Subject Subject Range Query Range Percent Splice Strand
pum-RE 82..1058 1..965 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:32 Download gff for FMO08835.5prime
Subject Subject Range Query Range Percent Splice Strand
pum-RE 682..1658 1..965 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:21 Download gff for FMO08835.5prime
Subject Subject Range Query Range Percent Splice Strand
pum-RE 682..1658 1..965 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:21 Download gff for FMO08835.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9098696..9098737 153..194 100 <- Minus
3R 9157118..9157267 1..152 97   Minus
3R 9079745..9079961 660..873 98 <- Minus
3R 9080558..9081022 195..659 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:32 Download gff for FMO08835.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4905467..4905683 660..873 98 <- Minus
arm_3R 4906280..4906744 195..659 99 <- Minus
arm_3R 4924418..4924459 153..194 100 <- Minus
arm_3R 4982840..4982989 1..152 97   Minus