FMO08836.5prime Sequence
925 bp (924 high quality bases) assembled on 2010-08-03
> FMO08836.5prime
CAGTCGACATGGCCGTTAGCAATATTGTCTGCGAGTGGCTAAGAGCTTTG
GGCCTGGCCCAATACGCCGAGAGCTTCCTGGACAATGGCTACGACGACCT
GGAGATCTGTAAACAGGTCGGTGATCCCGATCTAGATGCCATCGGCGTCG
AGAATCCTGCCCATAGACACAAGCTGCTCAAGAGCATCCGATCGCTGAGG
GAAAAGGGCGCCGCATCCGTTTACTTTATGCTCAACGATCCCAACTCGCT
CTCGGGCAGCATGGAGATCCTCTGCGAAACACCACCCAACAACGAACTGG
AGCTCGTCCTGCGGGAGCAGCTAGAGACGGACGGAGTCCGGCTGACCGCG
CATCCATACTCAACACCGCCCTCGAGTTGTCTGTCCGACAAGGAGGAGGA
TGAGATTTACGGATTCGGCTATGGCGTCTTCGCACCCCGCGTGGCCAGAG
GAGGGTTAACACAACAGCAACAGCTGCTGCAGCAGCAGACGCTGCAAACG
CAACAGAGCATACAGCAACAGCAGCAGCAGATGCAACAGCAGCAGCAACA
GTTACCAATTGTGCCAGGACAACAGCAGCAAAGGACCTCATCAGCATCAG
ACCCTGCCACCGAATGTCGCGCATTTGAACTTTGTGCAGCAAAACTGCCT
GAGTCCGCGCTCAGCTTATTTCTACGAATTTCCACCGACAGCTGAGGGCC
GCGAGACAAAGAAACGCACCACACTGGCCCGGCTGCTGAAAGGCTTGAAG
ACTGTCAATCGACGTGATCGGAACAATCAACAGAATGGCGCCCAGGCCAG
GGCGGCTAACGATCGTCTGCGGCACTTTCAATGATAAACGGCGGCGCCGG
CGGACAGCAGCACAGTTTCGAGGAGACAATCCACAGGTTGAAAGTACAAG
AGGCCATGCGGAAAAAGAAAAATTT
FMO08836.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SKIP-RI | 5049 | CG31163-RI | 1158..2077 | 7..925 | 4515 | 99.6 | Plus |
| SKIP-RB | 5049 | CG31163-RB | 1158..2077 | 7..925 | 4515 | 99.6 | Plus |
| SKIP-RG | 6489 | CG31163-RG | 1854..2413 | 367..925 | 2715 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22174366..22174727 | 7..368 | 1810 | 100 | Plus |
| 3R | 32079331 | 3R | 22278351..22278626 | 368..644 | 1335 | 99.6 | Plus |
| 3R | 32079331 | 3R | 22279228..22279336 | 694..802 | 530 | 99.1 | Plus |
| 3R | 32079331 | 3R | 22280798..22280889 | 801..891 | 395 | 97.8 | Plus |
| 3R | 32079331 | 3R | 22318569..22318706 | 157..20 | 285 | 80.4 | Minus |
| 3R | 32079331 | 3R | 22278706..22278755 | 645..694 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:54 has no hits.
FMO08836.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:05 Download gff for
FMO08836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31163-RB | 1130..2054 | 1..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:41 Download gff for
FMO08836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RB | 1153..2077 | 1..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:50 Download gff for
FMO08836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RB | 1153..2077 | 1..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:50 Download gff for
FMO08836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22278352..22278626 | 369..644 | 99 | -> | Plus |
| 3R | 22278706..22278755 | 645..694 | 100 | -> | Plus |
| 3R | 22279229..22279335 | 695..801 | 99 | -> | Plus |
| 3R | 22280799..22280885 | 802..887 | 98 | -> | Plus |
| 3R | 22281847..22281885 | 888..925 | 97 | | Plus |
| 3R | 22174361..22174727 | 1..368 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:41 Download gff for
FMO08836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18104951..18105057 | 695..801 | 99 | -> | Plus |
| arm_3R | 18106521..18106607 | 802..887 | 98 | -> | Plus |
| arm_3R | 18107569..18107607 | 888..925 | 97 | | Plus |
| arm_3R | 18000083..18000449 | 1..368 | 99 | -> | Plus |
| arm_3R | 18104074..18104348 | 369..644 | 99 | -> | Plus |
| arm_3R | 18104428..18104477 | 645..694 | 100 | -> | Plus |
