FMO08839.5prime Sequence
845 bp (690 high quality bases) assembled on 2010-08-03
> FMO08839.5prime
CAGTCGACATGGTTACATATCACTTTCGGTCAAGCCTAACTCAGTTTAGT
GTGCCACAGCTCGAAGCGCCAAGTGGCGAAAGTGCAAAGCGCAGCAAAGT
GCGAAAAGAAGGCAACAAGTCGAATATGAACACAAACAGTCCCAGCAAAA
ATGTGACTGTGAAATCGTCACAGCTATATAGGTATATAGCGCCCAGGAAC
CGATCCATGCTTGTCATGAAGGATCCACGGAGCATGCGAACTTTACGACG
AATGCCAAAACCTGGAAGCAATGAAATGGGAACAACCAGTGACTGCGCTG
CGAGTTTGTCACAGCAAATAAAGGCGGTCTCCAGTCCAACGCTGTCCGAG
CCGTGCTTAGAGGAGCAGCCACAAAAAGGAACTGATAGTACGGATGTGGC
CAACACAGGCAGCAGCGCCGGAAGTTGAGGCCTAGGCTTATTGCAGAAAT
TCAAACGCACCTTGAACAACTTTAACAACAAAAATCAATTGCACATCTCT
CCGCTATCACCAGCGGCAGTAGGTAACAATGCCCCAAAAACTAAGACATC
GCCAACAACAACAACCGCATCCATAGCACCTATGATAACGACGACCACAG
CTAGCGATCCTGGCTCAGAGGCCGGCGATACGAGCTCAGGAAAAATACCG
GTTTGGGCCCCTTATTTGGCGTTCTTCCAAAGAACGCCGTAAGACGAAGT
ACAACCGACGCGACAAGTGTTATTTCTGGTGATTCGGCATACAGATCGAA
CTAGAACAAGATGAGCAATAACTCCCGTGCGACATGGCCGTGAGCCTGCC
AAGATGAGCCCGCCGCTTTTGCGGTATACAAATGGATTCGTGGGG
FMO08839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RF | 3564 | CG43976-RF | 97..922 | 9..837 | 3815 | 97.8 | Plus |
| RhoGEF3-RA | 4541 | CG43976-RA | 97..922 | 9..837 | 3815 | 97.8 | Plus |
| RhoGEF3-RM | 12307 | CG43976-RM | 8104..8688 | 250..837 | 2625 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 300894..301407 | 308..823 | 2170 | 97.3 | Plus |
| 3L | 28110227 | 3L | 297898..298139 | 9..250 | 1195 | 99.6 | Plus |
| 3L | 28110227 | 3L | 298958..299016 | 250..308 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2387 | 520..603 | 116 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2432 | 506..594 | 113 | 61.8 | Plus |
FMO08839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:53 Download gff for
FMO08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RF | 72..908 | 1..845 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:35 Download gff for
FMO08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RA | 93..929 | 1..845 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:18 Download gff for
FMO08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RA | 93..929 | 1..845 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:18 Download gff for
FMO08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 297894..298139 | 1..250 | 98 | -> | Plus |
| 3L | 298959..299016 | 251..308 | 100 | -> | Plus |
| 3L | 300895..301427 | 309..845 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:35 Download gff for
FMO08839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 297894..298139 | 1..250 | 98 | -> | Plus |
| arm_3L | 298959..299016 | 251..308 | 100 | -> | Plus |
| arm_3L | 300895..301427 | 309..845 | 96 | | Plus |
