FMO08841.5prime Sequence
1153 bp (1046 high quality bases) assembled on 2010-08-03
> FMO08841.5prime
CAGTCGACATGACGCTGAACGAGAGCGACGCTACTCGCCTGGAGCTGACG
CGCAACTTCCTGGAACTGTCTCGAAATCCGGAAACATGCACCGCCCTGCG
CAGCTCGGACTGTATCCAGCTTCTGGTGCAGATTCTGCACGCCAACGACG
AAGGCCTCTCCACGGCGAAAAAGTACGCCAGCCAGGCGCTGCACAACATC
GTCCACAATAATCCGGAGGAGAAGGAGCGCCAGCGGGAGGTGAAGATGCT
GCGCCTGCTGGACCAGATCCTCGACTACTGTAACTTTCTGCACACCCAGT
TGCAGAGCGGCGGTGAGGCTATCGCAGATGATGAAGATCGTCATCCGCTG
GCGGCTATGAAGCTCCTGATGAAAGCCAGTTTCGACGAGGAGCACCGCCA
GACTATGTGCGAACTGGGAGCCCTCAAGGCGATTCCCAATTTGGTCCACC
TTGATCATGCGGTCCATGGACCGGCTGCCGGTAGGGAACAGTGCAACGCC
CTCAGGAGCTACGGCCTCATGGCCCTCACGAATCTCACCTTCGGAGACGA
GAACGTCCATAACAAATCGTATCTGTGCGGTCAGCGACAGTTCATGGAAG
TGGTCATTGCTCAATTTGAACACGGCTCCGGATGAACTGCTACAGGTTCT
TGCTGGTGTGCTTCGCAATCTTTCGTGGCGCGCGGACAAACACATGAAGA
CTATCTTTAACGAGCTGGGTACTGTGACCTCCTTGGCTCGAGCAGCCATG
CAAAACAAGAACGAGAACACTCTCAAGGCCATACTTTCAGCCCTTTGGAA
TCTCTCAGCGCACTGCAGCACCAACAAGGCGGAGTTTTGTGCAGTAGACG
GAGCACTGGCTTTTTTGGTCGGAATGCTTAGCTACGAGGGTCCGAGTAAA
ACTCTTAGATCATCGAAAATGCAGCGGCATTCTCGAAATGTATCGAGCCA
TATTGCGGTGTGTGACCGTACGACAATCTAAAACGGTACAATTGCCTGGC
ATTCTGTGGAACAGTTGAATCGGAAAGCCTAACCGTGGTAAGCAACTCCT
GCGGAAACCTGGTGAATCTTCTCGGGCGCCCGTCCCGGAGGAACATCAAT
ACCTCATTGAACACATTGCCATCTCCGACTGGCGGCCATACAGCCTCAGA
AAT
FMO08841.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Apc2-RA | 3538 | CG6193-RA | 209..1330 | 9..1123 | 5045 | 97.4 | Plus |
| Apc-RB | 8317 | CG1451-RB | 985..1861 | 183..1056 | 720 | 73.6 | Plus |
| Apc-RA | 8441 | CG1451-RA | 1109..1985 | 183..1056 | 720 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24164174..24164811 | 9..647 | 3145 | 99.8 | Plus |
| 3R | 32079331 | 3R | 24164870..24165358 | 643..1123 | 1605 | 93.7 | Plus |
| 3R | 32079331 | 3R | 28839194..28839906 | 902..183 | 530 | 72.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:48 has no hits.
FMO08841.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:50 Download gff for
FMO08841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apc2-RA | 202..1340 | 1..1135 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:38 Download gff for
FMO08841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apc2-RA | 204..1342 | 1..1135 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:46 Download gff for
FMO08841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apc2-RA | 204..1342 | 1..1135 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:46 Download gff for
FMO08841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24164169..24164809 | 1..645 | 99 | -> | Plus |
| 3R | 24164873..24165370 | 646..1135 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:38 Download gff for
FMO08841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19989891..19990531 | 1..645 | 99 | -> | Plus |
| arm_3R | 19990595..19991092 | 646..1135 | 93 | | Plus |
