FMO08843.5prime Sequence
677 bp (-83 high quality bases) assembled on 2010-08-03
> FMO08843.5prime
TTCAGTCGATATGAACACACTGGGTCCTAAGAAGGACGGAAGTCCAAATA
TAGACTTTTTCCAGTCGCCGGATACGCTGCAAGGCTTTAAATCGATTCGC
CAGTGGTTGCAGAAGAACTGCAAGAAGTATTTGGCCCACATTTCGGAGCT
CATCACGAAAGAGTCCTTGGCCCAATTGCTCTTTCACTTCCTGCAGTATG
TGGAAACCAAGCTGGGCAAGAACTCATCGGATCCGCCGGCAACCAGAATT
CCGATGCGTTGCTTTCTGGACTTCAAGAGCGGCGGTGGTCTGTGCATCAT
TTTCTTGACCATGTTCCGTTTCCGGGCCGAGCAACGCGGCAAGAAATTCG
ACTTCTCCATTGTCAAGAATCCCTCGCGCATGGATCCCAACATCCAGCTG
CTGATCGAGATTGAGCAGGCTTTGGTCGTGGCGGACTTGTATCGCATCCG
TAAATCTATATTCTGCCGGAGATTGAAAAGGGCTTCGAGGGAAAACTGCG
CGAGATCCTGGACAATCGACGGGTAGAGATTGTGTCGGACTAGGAGGACG
CCTCCCATATCGTCTATCCTGTGGTGGACCCGCATCCCGACGAGTATGCT
CTGCCCATTTTCAAGCGCGGCGGACATGTGATGCTGCATTGGTACTACTT
CTCTGATCCTACGATTCTTGGGCTGTT
FMO08843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mor-RB | 3791 | CG18740-RB | 102..769 | 11..676 | 2885 | 95.7 | Plus |
| mor-RA | 3983 | CG18740-RA | 102..769 | 11..676 | 2885 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15971874..15972299 | 676..253 | 1790 | 95.8 | Minus |
| 3R | 32079331 | 3R | 15972479..15972606 | 253..126 | 550 | 95.3 | Minus |
| 3R | 32079331 | 3R | 15972696..15972812 | 127..11 | 510 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:46 has no hits.
FMO08843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:49 Download gff for
FMO08843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mor-RA | 98..765 | 11..677 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:32 Download gff for
FMO08843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mor-RA | 103..770 | 11..677 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:16 Download gff for
FMO08843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mor-RA | 102..769 | 11..677 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:16 Download gff for
FMO08843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15972479..15972604 | 128..253 | 95 | <- | Minus |
| 3R | 15972696..15972812 | 11..127 | 95 | | Minus |
| 3R | 15971873..15972298 | 254..677 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:32 Download gff for
FMO08843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11798418..11798534 | 11..127 | 95 | | Minus |
| arm_3R | 11797595..11798020 | 254..677 | 95 | <- | Minus |
| arm_3R | 11798201..11798326 | 128..253 | 95 | <- | Minus |
