FMO08844.5prime Sequence
1125 bp (983 high quality bases) assembled on 2010-08-03
> FMO08844.5prime
CAGTCGACATGAGCCTGAATCAGCACAGTGGACCCGGCCCGCCGTCGGAG
ATCTGCGGATTATCGGTGGACCAGGTGGACTCATCGGCCGCCTCCCCTTT
CATCTGGCCGAGCACAGCGGGTATGTGCACCACCGCCACCACCGTCACAA
CATCGACCAATGGAGACGCCACCGCGGAAGCACCAGTGAAACATCAGCCG
CTCCACAACGGCGGCTGGATCGGAAATGGTCTTCCGCCGGCGCCCGTGAC
GCGGACCATATCATCGGATCGCCTGGTCACCGGCAGCTCGTGTCGGGCGC
TGCGCACTGCCGTCTCAGCATTATACTCCGTGGATGACTTCGTCAAGGAG
AAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTCACACATCGTAC
AACCGGCCAGGTGATGGTGCTCAAGATGAATCAGTTGCGGGCCAATCGAC
CGAATATGCTGCGGGAGGTGCAGCTGTTGAATAAACTTTCGCATGCGAAT
ATATTGAGCTTCATGGGCGTTTGCGTGCAGGAGGGCCAACTGCACGCCCT
GACCGAGTACATCAACGGCGGCTCCCTGGAGCAGCTGCTGGCCAACAAGG
AGGTGGTGCTCAGCGCCACGCAGAAGATAAGACTGGCGCTGGGTATAGCG
CGCGGCATGTCCTACGTTCACGACGCGGGCATCTTTCACAGGGATCTGAC
GAGCAAGAATGTACTTATTCGCAATCTGGCCACGATCAGTACGAAGCTGT
AGTGGGTGACTTTGGTCTAGCCGCAAAGATACCAGTCAAATCCAGAAATC
ACGCCTTGAGACAGTCGGCTCACCGTATTGGGTCAGTCCGGAGTGCCTGA
AGGGCCAGTGGTACGATCAGACAAGCGATGTCTTCTCCTTTGGCATCATT
CAATGCGAGATCATAGCCGCATCGAACCGGACCCGGATATGATGCCGCGG
CACGGCGTCGTTTGGACTGGACTACCTGGCATTTGGAAATTGGTGTCGAT
GGACCCTCTTCCTGGGTTTTACGACGGCCTTCTACTGGCTTGTCTGTCAA
AGGCAGAACCGAACCACGGTTCACAATGCCACCAAAAGTGTACTTTGCTG
CTGGGAATAATCAATACCAATCCTC
FMO08844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cdi-RA | 5665 | CG6027-RA | 1099..2202 | 7..1104 | 4950 | 97.3 | Plus |
| cdi-RB | 6523 | CG6027-RB | 1099..2199 | 7..1104 | 4920 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19087403..19087784 | 388..7 | 1910 | 100 | Minus |
| 3R | 32079331 | 3R | 19050291..19050491 | 707..507 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 19049843..19050068 | 1020..796 | 865 | 95.2 | Minus |
| 3R | 32079331 | 3R | 19060713..19060836 | 508..385 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 19050146..19050233 | 792..706 | 390 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:14 has no hits.
FMO08844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:48 Download gff for
FMO08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdi-RA | 1176..2290 | 1..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:26 Download gff for
FMO08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdi-RA | 1176..2290 | 1..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:01 Download gff for
FMO08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdi-RA | 1092..2206 | 1..1107 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:01 Download gff for
FMO08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19087405..19087788 | 1..386 | 98 | | Minus |
| 3R | 19049824..19050072 | 793..1037 | 94 | <- | Minus |
| 3R | 19050146..19050231 | 708..792 | 98 | <- | Minus |
| 3R | 19050291..19050489 | 509..707 | 100 | <- | Minus |
| 3R | 19060713..19060834 | 387..508 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:26 Download gff for
FMO08844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14875546..14875794 | 793..1037 | 94 | <- | Minus |
| arm_3R | 14875868..14875953 | 708..792 | 98 | <- | Minus |
| arm_3R | 14876013..14876211 | 509..707 | 100 | <- | Minus |
| arm_3R | 14886435..14886556 | 387..508 | 100 | <- | Minus |
| arm_3R | 14913127..14913510 | 1..386 | 98 | | Minus |
