FMO08845.5prime Sequence
1144 bp (1011 high quality bases) assembled on 2010-08-03
> FMO08845.5prime
CAGTCGACATGACCGAAGAGGACGATGATGTGGCCCAAAGGGTGGCGACG
GCGCCCGTCCGCAAGCCGGACGACGAGACGGCCTTCCTGGAGTACATCGA
AATGGAGAACTTCAAGTCCTACCGCGGTCACATAGTTGTGGGTCCTCTGA
AGCAATTCAACGCTGTTATTGGGCCCAACGGATCAGGCAAGTCAAACTTC
ATGGATGCCATCAGTTTCGTGATGGGCGAGAAGACCAGCAGTTTGCGAGT
AAAGCGCCTGAACGACCTCATCCATGGCTCCTCCATTGGCAAGCCCGTTT
CCCGCAGTTGCTACGTGACCGCCAAATTTGTGCTGAACGAGGAGCGCCAC
ATGGACTTCCAGAGGGCTGTTATCGGCGGCTCCTCGGAATATCGTATCAA
TGGAGAGAGCGTATCGAGCAGCACCTACTTGAACAAGCTGGAGAAAATTG
GCATCAATGTTAAGGCCAAGAACTTTTTAGTATTCCAGGGAGCTGTTGAG
AACATAGCCATGAAGACACCCAAGGAACGCACTGCTCTATTTGAGGAAAT
AAGCGGTTCTGGTCTGCTTAAGGACGACTATAATCGCCTTAAACAAGAAA
TGATTGTTGCCGAGGAGGAGACCCAGTTTACTTACCAAAAGAAGAAGGGC
ATCGCGGCGGAACGAAAAGAGGCCAAGCACGAGAAGATGGAAGCTGATCG
CTACACTCGCCTGCAAAACGAATACAATGAAAAACAAGTGGAGTATCAAT
TATTTAGGCTATTCCACGTGGAGAGGGACATCCGGAAGTTTACGAGCGAT
TTGGAGGTGAGGCAACAGGAAGTAAAAGCAGTCGAACAGCGGAAAGAAGC
TGCCGATGAAATCTTGCGCGAAAAGATGAAAGACGCCGGAAAATCACCCG
AGACCTGGCCAAAATCGATCAGGAATCAGAGAGTTTGAACCCAGATGAAC
AAACCCAGCCCCTTTTATCAAGGCCAAGAGATAGTTACCCACTGCAAGAA
GAAGCTCATTTTCCTTACAGAAGACTCTGGAACAGGCCAGGGAGGGGGAC
ATGCCCATCAGTCGACATACGAAACTGGAAAGGCACCTGGCTGATGTGGA
GCCTGAAAACGTTCGAGGAAAGAATCGACAGATCGCACGCCGCC
FMO08845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC1-RA | 3924 | CG6057-RA | 115..1225 | 9..1109 | 4895 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24058401..24058799 | 9..407 | 1965 | 99.5 | Plus |
| 3R | 32079331 | 3R | 24059284..24059672 | 721..1101 | 1215 | 92.8 | Plus |
| 3R | 32079331 | 3R | 24059061..24059230 | 556..725 | 775 | 97.1 | Plus |
| 3R | 32079331 | 3R | 24058853..24059003 | 406..556 | 725 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:39:04 has no hits.
FMO08845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:45 Download gff for
FMO08845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC1-RA | 93..1223 | 1..1119 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:20 Download gff for
FMO08845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC1-RA | 108..1238 | 1..1119 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:55 Download gff for
FMO08845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC1-RA | 108..1238 | 1..1119 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:55 Download gff for
FMO08845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24058394..24058799 | 1..407 | 98 | -> | Plus |
| 3R | 24058855..24059003 | 408..556 | 98 | -> | Plus |
| 3R | 24059062..24059230 | 557..725 | 97 | -> | Plus |
| 3R | 24059289..24059695 | 726..1119 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:20 Download gff for
FMO08845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19884116..19884521 | 1..407 | 98 | -> | Plus |
| arm_3R | 19884577..19884725 | 408..556 | 98 | -> | Plus |
| arm_3R | 19884784..19884952 | 557..725 | 97 | -> | Plus |
| arm_3R | 19885011..19885417 | 726..1119 | 92 | | Plus |
