FMO08846.5prime Sequence
885 bp (775 high quality bases) assembled on 2010-08-03
> FMO08846.5prime
CAGTCGACATGCGAGCATTTTGCACCGTCAGCGCGCCTTTGGAAGTATGC
GCGTCCTCAGCCGAGCAACTATCACCAGGCTCGCGATTCCTGGCCCTGAG
ACTTCTGGGGCAGCAGCAGCCGAAAACCTTGTACTTCCTAGTCGATGCCA
AGAGTCGAGTTCGAGAGGTTTACACGCAGACATGTCTGCACTTTGCCACG
CAAGGGATGCTGGACACCGAACTCTTCGGTCTGGCTGTGCTCATAGATGG
CGAGTACATGTTCGCAGATCCCGAGAGCAAGCTCTCAAAATATGGCCCAA
AGAGCTGGCGATCATCGCACACCCACGGGCTGGATGCCAACGGACGACCG
CTCCTGGAGCTACACTTTCGCGTGCAGTTCTACATCGAGAGCCCGTTCAT
GCTGAAAGATGAGACGTCCCGCCATAATTACTACCTGCAGCTGCGCCACA
ACATCTTGCAGCGCGATTTGCCGAGAGAACAGGCGGAGCAGGCACTGGTC
TTCCTTGCTGGACTTGCTCTTCAGGCGGACCTGGGTGATGCTCCTCCGGG
CACGAGTAATTCCAAGGATGATTCAGGAGAGGAGACATCGGCATCTCCTT
CTAACGGAGGAAGAGGTCTAAGTGCCACCACTACATTACCCAAGATCAGC
AAACGTGCTAATGAGAGGATGCTTTAACTCTCGACATATGTGGCGTCCAC
TCAAATAGAGAAACAATACCATTACCACCCAGCCTGCCACCGAATGGAGC
AGATTACTACCGGGATTGAGTATTACCTCCCCAGTGGACTGCCACTCCCT
GGGCGAGAAGTGCAATGAGAGCCTGTCATCGGGAGATTTGGGCTGGCCAC
GGAAAGCGGAACCTGCTATATATTCAACAGGATGT
FMO08846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ex-RB | 6454 | CG4114-RB | 718..1595 | 8..881 | 4080 | 98.2 | Plus |
| ex-RA | 6672 | CG4114-RA | 936..1813 | 8..881 | 4080 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 443226..443784 | 327..881 | 2335 | 97 | Plus |
| 2L | 23513712 | 2L | 438580..438727 | 99..246 | 740 | 100 | Plus |
| 2L | 23513712 | 2L | 438424..438516 | 8..100 | 465 | 100 | Plus |
| 2L | 23513712 | 2L | 443080..443162 | 245..327 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 1445..1540 | 177..77 | 123 | 62.4 | Minus |
FMO08846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:56 Download gff for
FMO08846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ex-RA | 907..1791 | 1..885 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:12 Download gff for
FMO08846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ex-RA | 933..1817 | 1..885 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:59 Download gff for
FMO08846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ex-RA | 933..1817 | 1..885 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:59 Download gff for
FMO08846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 438421..438516 | 1..100 | 96 | -> | Plus |
| 2L | 438582..438727 | 101..246 | 100 | -> | Plus |
| 2L | 443082..443161 | 247..326 | 100 | -> | Plus |
| 2L | 443226..443788 | 327..885 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:12 Download gff for
FMO08846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 438582..438727 | 101..246 | 100 | -> | Plus |
| arm_2L | 443082..443161 | 247..326 | 100 | -> | Plus |
| arm_2L | 438421..438516 | 1..100 | 96 | -> | Plus |
| arm_2L | 443226..443788 | 327..885 | 96 | | Plus |
