FMO08847.5prime Sequence
1021 bp (603 high quality bases) assembled on 2010-08-03
> FMO08847.5prime
CAATCGACATGCCGCCACACATCCTTGGAAGCGCCAGCGGAAGCAGCTCG
ACAGCGGCCGCCTCTCCTCCCACCAGCAGCGCCAGCCAGACGCCTCCATC
GCCAGCCATCCACCACAGTCATCTTAGCCAGCACAACGCAACCAGCGCCA
TGTCCAAGCCGACGACGCCTCATCGCCACGGCAACCCCAGCCTCCTTCCC
ACGCTCCAGTGGCCGTGGAACACCAGCCTGGGCAGCACCTCCACTGCCGT
GCCCGCCGCCTCGGCCAACAAAAACAAGCGGACGGCGGCCGGATCTGGGG
CGGCATTAGGATTGAGCGGTGAAGGGTCCTGTTTAACCGGTGGAGGAGCC
GCGTCGGCTAAGAAAGCGCGCAGCGATTTGCCCGGCTCCTTTGACGCAAG
CAAAAGACTGAAAGTGGCCGCTATGGAGGAGTCACAGACCAAGATTACCG
GTTTTTTTAAATCCCAAATGAAGCCGTCTCCTGGCGGCGGTGAGCTATCG
CCGCATCCCGGCCAGCAAAGCAATCCAGCCAACACGCTGACCATGAACAC
GCCCGCAACTACCGCCTCGCTGAACAAGTACTTCAATATCCTGTCGCAGC
TGAAAGAGCAGAAGGCCCAACAGCAACAACAGCAGCAGCAGGCATCCTGG
ACCTTGCCCACTCCAGCTCCAGTCGCCCCAGTCCCATCTTGCGCCCCCTG
TCGCGCCCGTGGTCGTCACTCCTAGTCCCAGTTTGCCCGTCCTCGGCGCT
GAATAAGATCTAACGCAGCATCAGCTGCCTGCCAATATACCGCATGTGTC
ACCCATCTGTGCATGACGACCAGTAGTGGATCTTCTGCAGCTCCTCGTCG
TCCTTGCTAGCTCTCAAATGTGCTCTAATACGGAAAACCGCACTATGAAC
TCGTGGCCATTCGACCCAAGTACGCCGGAATTGAACCAGCAGCAGCCACA
GGGAAAGGCGTACATGGTCCTACTGACCGCAGATACAAGCACGCTTTAAA
GCAAAGCTAGATCTCACCATC
FMO08847.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jing-RJ | 7491 | CG9397-RJ | 537..1553 | 9..1019 | 4015 | 94 | Plus |
| jing-RD | 4817 | CG9397-RD | 228..1244 | 9..1019 | 4015 | 94 | Plus |
| jing-RI | 6397 | CG9397-RI | 1808..2824 | 9..1019 | 4015 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6614229..6615075 | 9..854 | 3650 | 96.7 | Plus |
Blast to na_te.dros performed 2014-11-28 22:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6688..6765 | 558..640 | 160 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6856 | 596..641 | 149 | 80.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6786 | 596..640 | 144 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6807 | 596..640 | 144 | 80 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1138 | 596..641 | 140 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 500..641 | 137 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6840 | 596..640 | 137 | 82.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2357 | 596..641 | 131 | 76.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2510 | 493..641 | 130 | 60.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1146 | 597..640 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2354 | 597..641 | 126 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2402 | 573..641 | 125 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2419 | 527..640 | 123 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2623..2659 | 604..640 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6872..6915 | 597..640 | 121 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1583 | 597..641 | 117 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2378 | 597..641 | 117 | 73.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 982..1027 | 607..653 | 115 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6664..6744 | 561..640 | 113 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6872 | 597..688 | 113 | 60.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1162 | 553..641 | 113 | 62.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1093 | 607..641 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2407 | 573..640 | 111 | 64.3 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5594..5669 | 574..642 | 110 | 68.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7049..7124 | 574..642 | 110 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6958 | 604..687 | 109 | 61.8 | Plus |
FMO08847.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:55 Download gff for
FMO08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jing-RI | 1551..2530 | 1..980 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:11 Download gff for
FMO08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jing-RI | 1804..2783 | 1..980 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:29 Download gff for
FMO08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jing-RI | 1804..2783 | 1..980 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:29 Download gff for
FMO08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6614225..6615114 | 1..891 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:11 Download gff for
FMO08847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2501730..2502619 | 1..891 | 95 | == | Plus |
