FMO08848.5prime Sequence
970 bp (862 high quality bases) assembled on 2010-08-03
> FMO08848.5prime
CAGTCGACATGCAGAGATCCACAGACCGGTTGCGCCGGCTGAAAAAGCTG
AAGAGCGTTACGGGAGCGCAGGATGGCGTTGGTGGCGGCGATGCGGCGGC
GACGGCGGATAATCGGACCTCCGCATCGTCGGACACGAACGGAGCAGCCG
CCAGTAGCGGAGCCGGCGGCAATCAGCCAGGCACACTCAATCCGGAGGTC
TTCAAGCACTTGGACAAATCCGGACGCAGTGAATTCCTGAAGTACCTCAA
GCATCAGTTGCAGGATGCGGCGGATACGCCCGTTTACGACAAGAACGGCG
TCTTTAAGCAGGGCATCTCCAATGCCATATACCAGCTTCTTTGGCAGACT
CTGCGCTTCACTCACAAAAAAGACATAGTACTCCACCTGCTCCTGGAAGT
CGTGGCCCTCCATGCGGACTTTCCCAGCCTTATAGTGGACGTGGTTAACA
TTCTGGACAGCGAAACCTCCCTTATAACCGATGGACTTCAGGAAGAACGA
CATGCCTTTGTGCAACTTGTTAAAGACTTGGACAGGGTGATTCCAGAAAG
TCTTTTGAAAGAACGTTTGGAAATCGATACGTTGCAGGAGGCGGGAATCG
TCAAGAACAAGAGCTTTTACTCTAAGTTTCATCAAGGTCAAAACCAAGCT
ATACTACAAGCAGCGTCGGTTTAACCTTTTCCGCGAGGAGAGTGAAGGGT
TTTGCCAAGCTTATCACAGAGCTAAACCAGGAGTTCGACGAGAACACCAC
TCCAGAGAGCATAATGGATATCATAAAATCCCTTATAGGCTGCTTCAATC
TGGATCCTAATCTTGTGCTGGACATTATTATCGAGTCCTTTGAAACTCTT
CCGGATCGATGGAATTGTCATACCCTTGTGGCTAACTCCTTGCCCTCTGG
TGCCATTATTTTGCGAAGTCCTTCGCTACAATTCTGCCTCCTTAAGACTC
CCGACTCCCCCGCCCGTATA
FMO08848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tho2-RC | 5401 | CG31671-RC | 157..1111 | 9..960 | 4355 | 97.6 | Plus |
| tho2-RB | 5404 | CG31671-RB | 157..1111 | 9..960 | 4355 | 97.6 | Plus |
| tho2-RA | 5401 | CG31671-RA | 157..1111 | 9..960 | 4355 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2144115..2144367 | 657..404 | 1205 | 99.2 | Minus |
| 2L | 23513712 | 2L | 2144805..2145031 | 235..9 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 2144456..2144625 | 405..236 | 850 | 100 | Minus |
| 2L | 23513712 | 2L | 2143919..2144053 | 789..654 | 630 | 99.3 | Minus |
| 2L | 23513712 | 2L | 2143705..2143851 | 931..787 | 365 | 87.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:09 has no hits.
FMO08848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:54 Download gff for
FMO08848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tho2-RA | 140..1083 | 5..946 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:10 Download gff for
FMO08848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tho2-RA | 152..1095 | 5..946 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:55 Download gff for
FMO08848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tho2-RA | 152..1095 | 5..946 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:55 Download gff for
FMO08848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2144805..2145036 | 5..235 | 99 | | Minus |
| 2L | 2143920..2144053 | 654..788 | 99 | <- | Minus |
| 2L | 2144119..2144366 | 405..653 | 99 | <- | Minus |
| 2L | 2144457..2144625 | 236..404 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:10 Download gff for
FMO08848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2143920..2144053 | 654..788 | 99 | <- | Minus |
| arm_2L | 2144119..2144366 | 405..653 | 99 | <- | Minus |
| arm_2L | 2144457..2144625 | 236..404 | 100 | <- | Minus |
| arm_2L | 2144805..2145036 | 5..235 | 99 | | Minus |
