FMO08849.5prime Sequence
1135 bp (1013 high quality bases) assembled on 2010-08-03
> FMO08849.5prime
CAGTCGACATGCTGAGCCGCAAGCGCCGGGCGAGCAGCATATCCAGCCGG
CAGGACGAGGATCCGCTGCAGCTGGACGACTCGACGCCGGAGCAGTCACC
GGTGCAGCAGACGACGACACAATCGGCGCGAAAAAAGCGCCGTCTCGATC
CCACAGAACTGTGCCAGCAATTGTACGATTCCATAAGGAACATAAAGAAG
GAGGACGGTTCAATGCTGTGCGACACCTTCATCCGCGTGCCGAAGCGCCG
GCAAGAGCCCTCGTACTATGACGTGGTGGTCAATCCCATTGATCTGCTCA
AGGTTCAGCAGAAGCTGAAAACCGATTCCTACGACGATTTGGATGATCTG
ATGGCCGACCTGGAGCTGCTTATTGGCAATGCCAAGGCCTTCTACATACC
GGGCAGTAGCGAGCACCAGGACGCAGTCTCTCTGTGGTAGCACATTCATT
CGCAGAGACAGCGCATTATGGAGGCAAATGGATTGGCGGAGGAGGAGCCG
CGTGCCAGACGCATGTCGCGCCAAGTGCGCCGAATGACCAGCAGCACTGA
ACCTGGTGGCGATGGAGCAACTGATGACGAGTACAACCAGTACGAGGAGC
TCTTCGCCTCCGTTATGACCGCTACCGATCCCGTGGGCGATCGGTTAATG
CACCGCATGTTCCAACTGCTGCCCTCCAAGAAAATCTATCCAGACTACTA
CGATGTCATTGAGCATCCCATTGATCTGCGCCTGATTGCGACCAAAATAC
AAATGAACGCTTACTCCTCGCTGGCGGAGATGGAACGGGATCTGCTACAA
ATGACCAAAACGCATGTCTGTTCAACGAGCCTGGTTCTCAGATCTATAAG
ACGCCAAATCCCTGAAACGGATCTTTACGCAGCGGCGTATTGAGCTGGAG
ATGGGCAAAAGCAAGCTGGCTAAGCGCGTCAGAGTCTCCCCAGTGCAGCA
ATTGCTGCAACTAAAGAGGAGGTGACAGCTCGGACGACGAGAAAACCAGC
AAAAGGGCGAGGGGCCCATGTTGGCATTTGTTCGATTCCTTGTTCAACGC
ACCAGAACTTCCGGAACATCCGGAGAGTACTGGTCCTCCATTGGAACTCT
CTATAACTGCCAAGTTCGCGTTCCTCGGAGATTGA
FMO08849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polybromo-RA | 5119 | CG11375-RA | 88..1205 | 9..1118 | 5060 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24804221..24805172 | 957..9 | 4565 | 99.4 | Minus |
| 3R | 32079331 | 3R | 24804025..24804157 | 1094..963 | 310 | 87.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:37 has no hits.
FMO08849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:44 Download gff for
FMO08849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polybromo-RA | 80..1196 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:43 Download gff for
FMO08849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polybromo-RA | 84..1200 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:42 Download gff for
FMO08849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polybromo-RA | 84..1200 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:42 Download gff for
FMO08849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24804221..24805176 | 1..957 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:43 Download gff for
FMO08849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20629943..20630898 | 1..957 | 98 | | Minus |
