FMO08850.5prime Sequence
811 bp (811 high quality bases) assembled on 2010-08-03
> FMO08850.5prime
CAGTCGACATGACTGAGCGCGAGAACAATGTGTACAAGGCAAAGCTGGCC
GAACAGGCCGAGCGCTACGACGAAATGGTGGAGGCCATGAAGAAGGTCGC
CTCCATGGACGTAGAGCTGACCGTCGAGGAGCGAAATCTGCTGTCGGTGG
CGTACAAGAATGTGATTGGAGCACGCCGTGCCTCGTGGCGCATCATCACC
TCGATCGAACAGAAGGAGGAGAACAAGGGGGCCGAGGAGAAATTGGAGAT
GATCAAAACCTACCGCGGACAGGTGGAGAAGGAGCTGCGCGACATCTGCT
CGGATATACTGAACGTGCTCGAGAAGCATCTCATTCCATGCGCCACATCC
GGCGAAAGCAAAGTATTCTACTATAAGATGAAGGGCGACTACCATCGCTA
CCTGGCCGAATTCGCCACCGGCTCCGACCGCAAGGATGCGGCAGAGAACT
CGCTGATTGCCTACAAGGCGGCCAGCGATATTGCCATGAACGATCTGCCA
CCAACACACCCCATCCGTTTGGGCTTGGCATTGAACTTCTCGGTGTTCTA
CTATGAGATTCTCAACTCGCCGGACCGCGCTTGCCGCTTGGCGAAAGCCG
CTTTCGATGATGCCATTGCCGAGTTGGATACACTGAGCGAAGAGAGCTAC
AAAGACTCGACACTCATCATGCAGCTGCTGCGCGACTACCTCACATTATG
GACGTCCGATATGCAGGCAGAAGAATTATACCCCAACGCTGGTGATGGCG
AGCCCAAAGAGCAAATCCAGGATTTGAGGATCAGGACGTGTCGGCAAGCT
TTCTAGACCAT
FMO08850.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 14-3-3epsilon-RA | 1239 | CG31196-RA | 160..945 | 9..793 | 3845 | 99.4 | Plus |
| 14-3-3epsilon-RB | 3092 | CG31196-RB | 316..1098 | 9..793 | 3805 | 99.1 | Plus |
| 14-3-3epsilon-RD | 3360 | CG31196-RD | 316..1095 | 9..793 | 3775 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18247432..18247905 | 72..545 | 2370 | 100 | Plus |
| 3R | 32079331 | 3R | 18247970..18248151 | 542..723 | 895 | 99.5 | Plus |
| 3R | 32079331 | 3R | 18242846..18242909 | 9..72 | 320 | 100 | Plus |
| 3R | 32079331 | 3R | 18248212..18248285 | 721..793 | 275 | 94.6 | Plus |
| 2R | 25286936 | 2R | 10107470..10107576 | 603..709 | 265 | 83.2 | Plus |
| 2R | 25286936 | 2R | 10106006..10106101 | 501..596 | 210 | 81.2 | Plus |
| 2R | 25286936 | 2R | 10106354..10106449 | 501..596 | 210 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:00 has no hits.
FMO08850.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:43 Download gff for
FMO08850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 14-3-3epsilon-RA | 309..1107 | 1..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:53 Download gff for
FMO08850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 14-3-3epsilon-RA | 153..951 | 1..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:11 Download gff for
FMO08850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 14-3-3epsilon-RA | 153..951 | 1..802 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:11 Download gff for
FMO08850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18242839..18242909 | 1..72 | 94 | -> | Plus |
| 3R | 18247433..18247902 | 73..542 | 100 | -> | Plus |
| 3R | 18247971..18248151 | 543..723 | 99 | -> | Plus |
| 3R | 18248215..18248284 | 724..792 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:53 Download gff for
FMO08850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14073693..14073873 | 543..723 | 99 | -> | Plus |
| arm_3R | 14073937..14074006 | 724..792 | 94 | -> | Plus |
| arm_3R | 14068561..14068631 | 1..72 | 94 | -> | Plus |
| arm_3R | 14073155..14073624 | 73..542 | 100 | -> | Plus |
