FMO08852.5prime Sequence
759 bp (700 high quality bases) assembled on 2010-08-03
> FMO08852.5prime
CATTCGACATGAGCCAGCACACTTCGCAGTACGTTTTCAACTCCAAGGAA
GACTACAACGTAATCCTAGACAACATGAGTCGCGAGTTCGAAGAGCGGTG
GAATCACCAGACCCAGTCGCCCTACACCAATCTGGAAAACTATATAACCC
GGGCCGTCCTCGGCAACGGAAGTTTCGGCACTGTGATGCTGGTCAGGGAG
AAGAGTGGCAAGAACTACTATGCCGCCAAGATGATGAGCAAGGAGGATCT
GGTGCGGCTGAAGCAGGTGGCCCACGTACACAACGAGAAGCACGTCCTGA
ACGCCGCCCGATTCCCGTTCCTCATCTACCTGGTGGACTCGACCAAGTGC
TTCGACTATCTCTACCTAATCCTCCCGCTGGTCAATGGAGGAGAGCTGTT
CAGTTACCATCGCAAAGTTCGCAAGTTCAACGAGAATCTCGCCAGATTCT
ATGCCGCCCAGGTGGCACTTGCTCTTGAGTATATGCACAAGATGCACCTC
ATGTACCGTGATCTGAAGCCGGAGAACATTCTGCTCGATCAGCGCGGCTA
TATCAAAATAACGGACTTCGGTTTCACTAAGCGTGTGGATGGCCGCACAT
CATCGCTGTGTGGAACCCCGGAATACTTGGCCCCGGAGATTGTTCACTCC
GGCCCTACAACAAATCGGTGGGACTGGTGGGCCTTTGGTATCCTAGTGTA
CGAGTTTGTGGCAAGGCGGTCTCCCTTTGCCATTCAAATCGAGATGTAAT
CCTGATGTA
FMO08852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-C2-RB | 1349 | CG12066-RB | 171..922 | 9..759 | 3615 | 98.9 | Plus |
| Pka-C2-RC | 1346 | CG12066-RC | 171..919 | 9..759 | 3560 | 98.5 | Plus |
| Pka-C1-RD | 4480 | CG4379-RD | 1735..1898 | 477..640 | 220 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30696506..30696735 | 414..185 | 1150 | 100 | Minus |
| 3R | 32079331 | 3R | 30696792..30696968 | 185..9 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 30696259..30696424 | 581..416 | 800 | 98.8 | Minus |
| 3R | 32079331 | 3R | 30696026..30696206 | 759..580 | 730 | 97.3 | Minus |
| 2L | 23513712 | 2L | 9696932..9697095 | 640..477 | 220 | 75.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:51 has no hits.
FMO08852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:39 Download gff for
FMO08852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C2-RB | 171..921 | 9..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:12 Download gff for
FMO08852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C2-RB | 171..921 | 9..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:21 Download gff for
FMO08852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C2-RB | 171..921 | 9..758 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:21 Download gff for
FMO08852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30696792..30696968 | 9..185 | 100 | | Minus |
| 3R | 30696027..30696204 | 582..758 | 97 | <- | Minus |
| 3R | 30696259..30696424 | 416..581 | 98 | <- | Minus |
| 3R | 30696505..30696734 | 186..415 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:12 Download gff for
FMO08852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26522514..26522690 | 9..185 | 100 | | Minus |
| arm_3R | 26521749..26521926 | 582..758 | 97 | <- | Minus |
| arm_3R | 26521981..26522146 | 416..581 | 98 | <- | Minus |
| arm_3R | 26522227..26522456 | 186..415 | 99 | <- | Minus |
