FMO08853.5prime Sequence
1138 bp (975 high quality bases) assembled on 2010-08-03
> FMO08853.5prime
CAGTCGACATGCAGTACTTAAACTTTCCGCGCATGCCAAACATTATGATG
TTCCTGGAGGTTGCGATCTTATGCCTGTGGGTGGTCGCAGACGCATCGGC
CAGTTCGGCCAAGTTCGGCAGCACAACGCCCGCAAGTGCGCAGCAGTCGG
ATGTGGAACTGGAGCCCATCAATGGGACTCTCAATTACCGACTGTACGCC
AAGAAGGGCAGGGACGACAAACCCTGGTTTGATGGCCTAGACAGCAGGCA
CATCCAGTGTGTCCGACGTGCCCGTTGCTACCCCACCTCGAACGCAACCA
ACACCTGTTTCGGCTCAAAATTGCCCTATGAGCTGAGCAGCCTAGATCTC
ACCGACTTCCACACCGAAAAGGAGCTGAACGATAAGCTGAACGACTACTA
TGCCCTGAAGCACGTGCCCAAATGTTGGGCAGCTATACAGCCCTTTTTGT
GCGCCGTCTTTAAGCCGAAGTGTGAAAAAATCAACGGCGAGGACATGGTC
TACCTGCCATCTTACGAGATGTGCCGAATTACCATGGAACCCTGTCGCAT
TTTGTACAACACGACGTTTTTCCCAAAATTCCTTCGCTGCAACGAAACAC
TCTTTCCGACGAAATGCACAAACGGAGCACGAGGAATGAAATTCAACGGA
ACTGGCCAGTGTTTAAGTCCTTTGGTTCCGACAGATACGTCAGCCAGCTA
TTATCCTGGCATCGAGGGCTGCGGCGTGCGATGCAAGGATCCACTCTATA
CCGATGATGAGCATCGGCAGATCCACAAACTGATCGGATGGGCTGGCAGC
ATATGTCTTCTGTCTAACCTTTTCGTGGTGTCCACCTTCTTCATCGACTG
GAAGAATGCCAACAAGTATCCCGGCAGTAATTGTGTTCTACATAATCTTT
GCTTTATATTTGTTTGCGTCGGCTGGTTGCTTCAGTTTACTTCTGGCTCG
CGAGTAGGAAATGTTATGTCGTAAAGTATGGAACACTTCGCCACTCAGAA
CCTACAGCCCGGGGAAAATCTTTCCTTGCATTGGTCCTTTTGGCTGGCCA
TTATTTTCTCACCGCTTGATTGTTTGGTTTGGTGTCCCCACCCTCCCCTG
CATTTGAAGGCATGGCCAGTCCCAGAATCGATAAGAAA
FMO08853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smo-RA | 4008 | CG11561-RA | 245..1316 | 9..1081 | 4905 | 97.6 | Plus |
| CG17078-RE | 3132 | CG17078-RE | 1..305 | 351..47 | 1525 | 100 | Minus |
| CG17078-RE | 3132 | CG17078-RE | 371..409 | 47..9 | 195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 278641..279124 | 439..922 | 2280 | 99 | Plus |
| 2L | 23513712 | 2L | 277930..278323 | 47..440 | 1970 | 100 | Plus |
| 2L | 23513712 | 2L | 279184..279283 | 922..1024 | 275 | 91.3 | Plus |
| 2L | 23513712 | 2L | 277826..277864 | 9..47 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:46 has no hits.
FMO08853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:38 Download gff for
FMO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smo-RA | 233..1316 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:17 Download gff for
FMO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smo-RA | 239..1322 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:10 Download gff for
FMO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smo-RA | 239..1322 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:10 Download gff for
FMO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 277820..277863 | 1..46 | 91 | -> | Plus |
| 2L | 277930..278323 | 47..440 | 100 | -> | Plus |
| 2L | 278643..279124 | 441..922 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:17 Download gff for
FMO08853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 277820..277863 | 1..46 | 91 | -> | Plus |
| arm_2L | 277930..278323 | 47..440 | 100 | -> | Plus |
| arm_2L | 278643..279124 | 441..922 | 98 | -> | Plus |
