FMO08854.5prime Sequence
1095 bp (960 high quality bases) assembled on 2010-08-03
> FMO08854.5prime
CAGTCGACATGGATACATTTTCCGCTGCGGTTTTCCCCCGGCAGCCGGTG
GCTTTCGTCCTGGTCCTGGCCACAGCTCTTTCCCTGGTCCAAGGTGAACA
GCACCCCGCCACTGCAGACGAAGGACCCCTATCCGAGATTCTCACTGCCG
TTGGTTCCGAGGTGGCGCTCCCATGCGATCTGGTGCCCGGAACTGGGATC
GTCGACAAGGTGCAGCTGGTCATCTGGTATCGCCAGGGAAACGTGAAGCC
CATCTATACCTTTGATGCGCGAGGTCGTCCATTGAATCTGGGCATTCCCT
GGGCAGATGAAAGTGTGTTCAACAAGAAGGCCCACTTCCACCACGACACA
GATCCTCCTGCCCTGCGGATCAAGAACATTCAAACCTCCGATGCCGGACT
CTACAAGTGCCGAGTGGACTTCCACAAGTCACCAACTCGCAACTGGCGCA
TCAATGTAACAGTGCTAGTTCCACCCACTGCGCTGACCATCCTGGATCAC
CATGGGGCCGAGATCCGGGACCAGACGGCAGGACCGTACCTGGAAGGCGA
CAGCATCGACCTCACCTGCCTCTCGAGCGGCGGAGTTCCTCCTCCGCGGG
TCTCCTGGTGGCGGGAGCACGCCCTGATCGACGACTCCTTTCAGGTGCTG
CCCGACGGCTCCGTGCGGAATGTCCTGCGCCTCAAGATCATTCAGCGGAA
GGATCTCCTCACGATGTACACCTGCCAGGCGAGCAATGGCCACGTGGTTC
CAGCGCTGACCAAGAATGTTATCCTCGACATGAATCTTCCCCCACTTAGT
TTGCTTTTGCAAGGCCTTAACCATGCCGTAATTGCTGGAACCCGATCCCA
CGTTACTTGCACGGCCATTGGCGCTCGTCCTCCGCCTGTAATAATCTGGT
CTAAAGCGGACAGATTGTGCGGGGAGCCACTTCCTCGACGTCGTCCGATG
GGACACAACCCTTACGGAACTGTGGCTGATTCCCGTTTCCGAGGAATATG
AACGCAGGGGCTTGTCCATTTACCTGAATGGCGGGATTACCTCCCGCACC
TTCATGAGCAACCCTGTATGACATCTTCGGGTAATGAACACGGAC
FMO08854.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34371-RB | 5760 | CG34371-RB | 823..1878 | 9..1058 | 4800 | 97.3 | Plus |
| CG34371-RA | 5760 | CG34371-RA | 823..1878 | 9..1058 | 4800 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23172487..23172733 | 713..467 | 1220 | 99.6 | Minus |
| 2R | 25286936 | 2R | 23172797..23173005 | 468..260 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 23176151..23176288 | 259..122 | 690 | 100 | Minus |
| 2R | 25286936 | 2R | 23169714..23169865 | 937..787 | 650 | 96.7 | Minus |
| 2R | 25286936 | 2R | 23191124..23191239 | 124..9 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 23170584..23170657 | 786..713 | 355 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:21:27 has no hits.
FMO08854.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:37 Download gff for
FMO08854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34371-RA | 813..1876 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:56 Download gff for
FMO08854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34371-RA | 815..1878 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:52 Download gff for
FMO08854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34371-RA | 815..1878 | 1..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:52 Download gff for
FMO08854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23172487..23172731 | 469..713 | 99 | <- | Minus |
| 2R | 23172797..23173005 | 260..468 | 100 | <- | Minus |
| 2R | 23176151..23176286 | 124..259 | 100 | <- | Minus |
| 2R | 23191125..23191246 | 1..123 | 96 | | Minus |
| 2R | 23169714..23169865 | 787..937 | 96 | <- | Minus |
| 2R | 23170584..23170656 | 714..786 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:56 Download gff for
FMO08854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19057237..19057388 | 787..937 | 96 | <- | Minus |
| arm_2R | 19058107..19058179 | 714..786 | 98 | <- | Minus |
| arm_2R | 19060010..19060254 | 469..713 | 99 | <- | Minus |
| arm_2R | 19060320..19060528 | 260..468 | 100 | <- | Minus |
| arm_2R | 19063674..19063809 | 124..259 | 100 | <- | Minus |
| arm_2R | 19078648..19078769 | 1..123 | 96 | | Minus |
