FMO08855.5prime Sequence
686 bp (686 high quality bases) assembled on 2010-08-03
> FMO08855.5prime
CAGTCGACATGGAATTTTCACTGCTCAACAAGGCGAACTTCGACAAGGAT
TGTTTGTACACCGCGAACTCGGAGTTCTACAACAGCGGCGCCAATGGAGG
AGGACTCTCCGTGGCCAATCACATAAATCACTACAACCTCATGATTGACT
CCAGTTACAAGCTCTGCGCCAACGAGTCCGCAATCCGGGGTTCCCTCAAC
CAGGAGTCGAGCTTATTGTTCTCCAAAATCACCACTGTCTCCGAGTTTTA
CCCGGCCACCCATAACATTGGCTCCTACAACACGGACTTCCATTTGAAGT
CCTATGGAGACGACGGCTTGAGCCTGACCGACAAATCAAAACAGAGGCGC
ATTCGCACCACTTTCACGTCCAACCAGCTGAACGAGCTGGAGAAGATCTT
CCTGGAAACCCACTACCCAGATATCTACACCAGGGAAGAGATCGCATCCA
AGCTGCACTTGACGGAAGCTCGAGTTCAGGTCTGGTTCCAGAACAGAAGA
GCCAAGTTTCGCAAGCAGGAGAGGCATGCCATTTACATAATGAAGGACAA
GTCGAGCAAATTGGATGGCCGGAAGAATCCTGTAGCAGGATCGAAATACC
TGGGCCCATCTCTCAAGGGACCCCAGAATGGCCATGGCCGTCAAATGAAA
TGCTTATACGATCAAATAGCAAGCTTTCTAGACCAT
FMO08855.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHDP-RA | 942 | CG11182-RA | 129..788 | 9..668 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23884036..23884312 | 285..9 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 23883745..23883941 | 481..285 | 985 | 100 | Minus |
| 2R | 25286936 | 2R | 23883290..23883480 | 668..478 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:21:42 has no hits.
FMO08855.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:36 Download gff for
FMO08855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHDP-RA | 1..660 | 9..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:30 Download gff for
FMO08855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHDP-RA | 121..788 | 1..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:10 Download gff for
FMO08855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHDP-RA | 121..788 | 1..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:10 Download gff for
FMO08855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23883747..23883940 | 286..479 | 100 | <- | Minus |
| 2R | 23883290..23883478 | 480..668 | 100 | <- | Minus |
| 2R | 23884036..23884320 | 1..285 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:30 Download gff for
FMO08855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19770813..19771001 | 480..668 | 100 | <- | Minus |
| arm_2R | 19771270..19771463 | 286..479 | 100 | <- | Minus |
| arm_2R | 19771559..19771843 | 1..285 | 98 | | Minus |
