FMO08856.5prime Sequence
1116 bp (921 high quality bases) assembled on 2010-08-03
> FMO08856.5prime
CAGTCGACATGCAGCGACGAGAACGGCAAGCAAGTGGCGGTGGCCCACAA
ACGACAACTGCCGGTCCATCCGCTGGTAATGTGGCAAATGCCACCACAGC
CCTAGCCGGTGGTAAAAGCTCAAGCAATAACATGTATTCCACCCGCCAAT
CTGTAAGCACCACGACCGGTGTACTTATGGTCGGACCAAATTTTCGTGTC
GGTAAAAAAATTGGCTGTGGTAATTTTGGCGAATTGCGTTTAGGCAAAAA
CCTTTACAACAATGAACATGTAGCAATAAAAATGGAGCCTATGAAGTCAA
AGGCTCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCA
CATGCCGATAACGCCCCAGATGGCATACCACGCATTTATCATTTGGGCAC
TTGCGGTGGCCGTTATAATGCCATGGTTTTAGAGTTATTGGGATTATCAT
TAGAAGATCTCTTCAATATTTGCGCCCGTAAATTTTCACTTAAGACTGTA
TTGATGATAGCGAAACAACTTCTCCACCGGATCGAATATGTTCATAGTCG
GCACTTAATATATAGGGATGTGAAACCAGAGAACTTTCTCATTGGCAGAA
CGTCAACAAAACGTGAAAAAATTATACATATAATTGATTTCGGTTTGGCC
AAAGAATACATTGATTTAGATACAAATAGGCATATACCATATCGGGAGCA
TAAATCCCTAACTGGAACGGCACGTTATATGTCAATCAACACGCACATGG
GGCGTGAGCAGTCGCGACGCGATGATCTGGAGGCATTGGGGCATATGTTT
ATGTATTTCTTAAGGGGTTCACTGCCGTGGCAAGCCTAAAGGCTGATACA
CTCAAGAGAGATATCAAAAAATCGGTGATACGAAACGAGCAACGCCTATC
GAGTTGCTTTGTGATGGACTCCGGAAAATTTGCTACTTATTTGCGTTATG
TACGCGTTAAATTTTTCAAAACTCCCGACATGTTTTTTGGCAAAACTGTT
TTATAACTTTTTCCATGTGAGGGATCACCGAGAAGGCGATTCTACTGACA
GGAAGACAATGGAAAATCAGCTTTCCTAGCACTTCGCAGGCCGGCGTGCC
CAGAAAGTGGGCTAAA
FMO08856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-RF | 2171 | CG6963-RF | 596..1669 | 5..1063 | 4680 | 96.6 | Plus |
| gish-RM | 5623 | CG6963-RM | 1319..2390 | 5..1061 | 4670 | 96.6 | Plus |
| gish-RL | 2945 | CG6963-RL | 1037..2108 | 5..1061 | 4670 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16296835..16297104 | 636..903 | 1235 | 98.9 | Plus |
| 3R | 32079331 | 3R | 16289629..16289840 | 33..244 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 16293986..16294153 | 354..521 | 825 | 99.4 | Plus |
| 3R | 32079331 | 3R | 16296662..16296776 | 522..636 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 16292722..16292834 | 242..354 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:26 has no hits.
FMO08856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:35 Download gff for
FMO08856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RF | 555..1541 | 1..979 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:36 Download gff for
FMO08856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RF | 591..1577 | 1..979 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:18 Download gff for
FMO08856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RF | 591..1577 | 1..979 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:18 Download gff for
FMO08856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16275135..16275169 | 1..34 | 91 | -> | Plus |
| 3R | 16289631..16289839 | 35..243 | 100 | -> | Plus |
| 3R | 16292724..16292834 | 244..354 | 100 | -> | Plus |
| 3R | 16293987..16294153 | 355..521 | 99 | -> | Plus |
| 3R | 16296662..16296776 | 522..636 | 100 | -> | Plus |
| 3R | 16296836..16297104 | 637..903 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:36 Download gff for
FMO08856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12122558..12122826 | 637..903 | 98 | -> | Plus |
| arm_3R | 12100857..12100891 | 1..34 | 91 | -> | Plus |
| arm_3R | 12115353..12115561 | 35..243 | 100 | -> | Plus |
| arm_3R | 12118446..12118556 | 244..354 | 100 | -> | Plus |
| arm_3R | 12119709..12119875 | 355..521 | 99 | -> | Plus |
| arm_3R | 12122384..12122498 | 522..636 | 100 | -> | Plus |
