FMO08862.5prime Sequence
969 bp (681 high quality bases) assembled on 2010-08-03
> FMO08862.5prime
CAGTCGACATGGTACACGGACCGCCGGCTCGCAGAAAATCACAGCAGCAG
CATGAGGCCTGCTAGATGGACATGGAGCGGCAGCCCACACCGCCAGACGG
CTGATGGGGATGGGTGGTGGTCTTCGGCTCCTTCATGATACACATAGTTA
CCGATGGCATGACCTACTCCTTTGGCATCTTCTACAATGAGTTCCTGGAC
TATTTCAACGAGGGCAAAGGCTACACGGCTTGGATTGCCTCCATAATGGT
GGGCGTGACCTTCTCATCCGGACCGATCAGCTCGTCGTTCGTAAATCGAT
ATGGCTGTCGTGCGGTGACCATAGCGGGCTCCATTTTGGCCGCCAGCTGC
ATCATCGTGAGCATGTTCGCCCAGAATGTCCTCACGCTGATCATTACAAT
CGGTTTCGGAACGGGCTTGGGCTTTGGGCTCATCTACCTGCCGGCCATTG
TGAGTGTGACGCAATATTTCGAAGCCAAGAGATCTCTGGCCACGGGAATC
GCCGTCTGCGGCTCCGGATTCGGTACGTTTGTCTTTGCCCCGCTCACGGA
GTTCCTGATCGGCAACTACGGGTGGAGCGGTGCGATGCTAATTATCGGCG
GCATCGTGCTCAACTGCATCATCTTTGGGGCCATGTTCCGACCGCTTGAG
CTAGAGGCACCGCCGCAGACGCCGCCGAACACGCTGAAGCATTCCCCAAT
CTGGCCAAGAAGTCGGCCATTTTCGATCATAACACCACCCGCGGCGGAGC
TGGGAGCCCCTCAAGGTCCTGCCTAATGATCATTACCTGCAGCTGCCGCA
GCTGCACGGTATACAGCGTGCTCGGGGGGTGCCCTATGCCGGTCCACAGC
GTTGGCCACAACCTCAAGCTCATCTGAACACTACCTGAACGCTCCTTAAT
GGACAGGGACCTACCTTGGGGGATCCCACCGCGGGCGGTGGTGTAATAGA
CCCGCACGATACTTGCGTC
FMO08862.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mct1-RB | 2738 | CG3456-RB | 411..1345 | 7..943 | 4020 | 96 | Plus |
| Mct1-RA | 2955 | CG3456-RA | 628..1562 | 7..943 | 4020 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2200004..2200598 | 270..869 | 2445 | 96.5 | Plus |
| X | 23542271 | X | 2198800..2198943 | 7..150 | 690 | 98.6 | Plus |
| X | 23542271 | X | 2199820..2199940 | 151..271 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:49 has no hits.
FMO08862.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:32 Download gff for
FMO08862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mct1-RA | 621..1578 | 1..960 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:33 Download gff for
FMO08862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mct1-RA | 623..1580 | 1..960 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:48 Download gff for
FMO08862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mct1-RA | 623..1580 | 1..960 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:48 Download gff for
FMO08862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2198795..2198943 | 1..150 | 97 | -> | Plus |
| X | 2199820..2199939 | 151..270 | 100 | -> | Plus |
| X | 2200005..2200606 | 271..876 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:33 Download gff for
FMO08862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2092828..2092976 | 1..150 | 97 | -> | Plus |
| arm_X | 2093853..2093972 | 151..270 | 100 | -> | Plus |
| arm_X | 2094038..2094639 | 271..876 | 96 | -> | Plus |
