FMO08864.5prime Sequence
924 bp (801 high quality bases) assembled on 2010-08-03
> FMO08864.5prime
CAGTCGACATGCCAGAAGAAGCAGAGACCTTTGCATTCCAGGCTGAGATT
GCTCAGCTGATGTCCCTGATCATCAACACATTCTACTCGAACAAGGAGAT
TTTCCTGCGCGAGTTGATCTCGAACGCTTCCGATGCCCTGGACAAGATCC
GCTATGAGTCCCTTACTGACCCCAGCAAGCTGGACTCTGGCAAGGAGCTG
TACATCAAGCTGATCCCTAACAAGACGGCTGGTACTCTGACCATCATTGA
TACCGGTATCGGTATGACCAAGTCCGACCTGGTCAACAACTTGGGAACCA
TCGCCAAGTCCGGAACCAAGGCCTTCATGGAGGCTCTGCAGGCTGGTGCC
GACATTTCCATGATCGGTCAGTTCGGTGTGGGTTTCTACTCCGCCTACCT
GGTCGCCGACAAGGTGACTGTCACCTCCAAGAACAACGATGACGAGCAGT
ACGTGTGGGAGTCCTCTGCCGGAGGCTCTTTCACAGTCCGTGCCGACAAC
TCTGAGCCCCTGGGCCGTGGCACCAAGATCGTGCTGTACATCAAGGAGGA
CCAGACCGACTATCTGGAGGAGAGCAAGATCAAGGAGATTGTTAACAAGC
ACTCCCAGTTCATTGGCTACCCCATCAAGCTGCTCGTAGAGAAGGAGCGC
GAGAAAGGAGGTCAGCGACGATGAGGCTGATGATGAGAAGAAGGAAGGTG
ATGAGAAGAAGGAGATGGAGACTGATGAGCCCAAATCGAGGATGTTGGCG
AGGATGAGGATGCCGACAGAAGACAATATGCCAGAAGAAAAGACCATCAG
GAGAAGTACACTGAGGATGAGGAGCTGACCGACCCAGCCCATCTGACCCG
CTATCTCCGATGATATCCTCCCAAGAGGATTACGGGAGTCCTACAAATCC
CTGACCAACGACTGGGAAGATAAC
FMO08864.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp83-RB | 2960 | CG1242-RB | 400..1320 | 9..921 | 4145 | 97.5 | Plus |
| Hsp83-RA | 2713 | CG1242-RA | 153..1073 | 9..921 | 4145 | 97.5 | Plus |
| Gp93-RA | 2841 | CG5520-RA | 434..496 | 90..152 | 195 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3194499..3195419 | 9..921 | 3825 | 97.3 | Plus |
| Y | 3667352 | Y | 1974862..1975027 | 596..761 | 735 | 98.8 | Plus |
| Y | 3667352 | Y | 1945382..1945547 | 596..761 | 720 | 98.2 | Plus |
| Y | 3667352 | Y | 1959892..1960057 | 596..761 | 720 | 98.2 | Plus |
| Y | 3667352 | Y | 1967986..1968151 | 596..761 | 720 | 98.2 | Plus |
| U | 3151297 | U | 1163247..1163385 | 735..596 | 635 | 98.6 | Minus |
| Y | 3667352 | Y | 1959696..1959750 | 63..9 | 275 | 100 | Minus |
| Y | 3667352 | Y | 1974666..1974720 | 63..9 | 275 | 100 | Minus |
| Y | 3667352 | Y | 1945186..1945239 | 63..10 | 270 | 100 | Minus |
| Y | 3667352 | Y | 1967790..1967843 | 63..10 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:21:20 has no hits.
FMO08864.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:30 Download gff for
FMO08864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-RA | 334..1263 | 1..924 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:51 Download gff for
FMO08864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-RA | 145..1074 | 1..924 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:49 Download gff for
FMO08864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-RA | 145..1074 | 1..924 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:49 Download gff for
FMO08864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3194491..3195420 | 1..924 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:51 Download gff for
FMO08864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3194491..3195420 | 1..924 | 96 | | Plus |
