FMO08865.5prime Sequence
1123 bp (1007 high quality bases) assembled on 2010-08-03
> FMO08865.5prime
CAGTCGACATGAGCTTCAGTTCGGCCAGCGGCAGGGAGAATAATGTCCGC
AAATTATCCTTCCTGGGCTTCAATACCAAAAAGAAGTCTGGCAATGAGGA
TCCCGACGAGGTGCTGCTGGACTCGGAAATGGACAAGGTCTTTGCCGGCA
ACAGTGCGCGCAAGGACAAGTTCGATGTAAACACCTTCCAGGACAACTCC
CAGCTGCCCATTGGATCCCGCAAGAAGAATAGCATCCGCACAAACGATCT
GAACATCGAGGAGGACTCGGAGTACGAGAGCCAAACGGAGCCATTGAATA
ATGCACAAAACTATGATGACATCCCCGAAGACTTCCCGCTAGTCTCGGAG
AGAGCCGGACACGGCGATCACTCGGACAACTCGGTGGACGAGAAGCACGT
CCAGTTTGGCGGCAAAAAGAAGATCCCGCCCAGTTTGAGCTATGATGAAC
AGCCCACGGACCAATCGCACGAACGTAAACGCAGAAGAAGCCGCCATCAG
TATTATAGACAACGTAAATTCTCACATCAGGACAGCGTGGAACCCAAAAA
CAAGCTCGAGGAAAACGGTGATGCAGGTGCGCGTCGCATCTCTGTGCAGC
CTGAGGACACGGCATTGGAGGAGGCTGATCTTAACGAGCTGAGATCACAT
CGTTCGGACGACCCGCGTGCCCTGCGCCGCCATAAGATCCATCACTCATC
CATCAAGTTGCGCGAGTTGCCCCAAATAACGATTTCCCCCTTCACCAACA
AGAAGCCCGAGGTGGATCATAGTCCTCATGAGATCTTTGTGCAATTGGAT
GAGCTCACAGGCGTGGGCGAGGATCGCGATGGAAGGAGACGGCCCGTTGG
ATCAGTATGAGGAGGACGTGGAGGAGGGCTCCGATCGTTGGGGCAAGCCC
CATGTTGCCTCCCTCTCCTTCCACTCGCTGCTCAATTTGCGTCGCTGCCT
GGAAACGGCGTTGTCCTGCTCGATCTAACGAGAAGACCTGCCTGCCGTGT
TTATCGCGTGTAGAACAGAATGGTGAATCGAGGACTGATTGACTCATGAC
AAGCATCGGTGATGCCTTTCGCTGCTCCTGGCATCGCTGTGCACCAACCA
AGGGGTGCTTGCCCTCACAGAGG
FMO08865.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-RH | 4869 | CG8177-RH | 344..1423 | 9..1080 | 5020 | 98.4 | Plus |
| CG8177-RA | 5144 | CG8177-RA | 418..1497 | 9..1080 | 5020 | 98.4 | Plus |
| CG8177-RB | 5173 | CG8177-RB | 418..1497 | 9..1080 | 5020 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9779652..9779907 | 235..490 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 9780764..9780987 | 781..999 | 870 | 97.8 | Plus |
| 3L | 28110227 | 3L | 9780534..9780697 | 619..782 | 820 | 100 | Plus |
| 3L | 28110227 | 3L | 9779444..9779593 | 85..234 | 750 | 100 | Plus |
| 3L | 28110227 | 3L | 9780121..9780253 | 489..621 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 9771842..9771919 | 9..86 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:24 has no hits.
FMO08865.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:29 Download gff for
FMO08865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RF | 822..1922 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:07 Download gff for
FMO08865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RB | 410..1510 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:25 Download gff for
FMO08865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RB | 410..1510 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:25 Download gff for
FMO08865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9771834..9771919 | 1..86 | 96 | -> | Plus |
| 3L | 9779446..9779593 | 87..234 | 100 | -> | Plus |
| 3L | 9779652..9779907 | 235..490 | 100 | -> | Plus |
| 3L | 9780123..9780252 | 491..620 | 100 | -> | Plus |
| 3L | 9780536..9780697 | 621..782 | 100 | -> | Plus |
| 3L | 9780766..9781008 | 783..1019 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:07 Download gff for
FMO08865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9764934..9765019 | 1..86 | 96 | -> | Plus |
| arm_3L | 9772546..9772693 | 87..234 | 100 | -> | Plus |
| arm_3L | 9772752..9773007 | 235..490 | 100 | -> | Plus |
| arm_3L | 9773223..9773352 | 491..620 | 100 | -> | Plus |
| arm_3L | 9773636..9773797 | 621..782 | 100 | -> | Plus |
| arm_3L | 9773866..9774108 | 783..1019 | 95 | -> | Plus |
