Clone FMO08866 Report

Search the DGRC for FMO08866

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:88
Well:66
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNc73EF-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08866.5prime Sequence

1159 bp (990 high quality bases) assembled on 2010-08-03

> FMO08866.5prime
CAGTCGACATGCATAGAGCCCACACAGCCTTCAGCCTGGCCTTGTCGCCG
ATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAGAGCAGCAGCAGTCA
GCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCGCACCTACAACTCCG
CAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCTCCTACGTGGAGGAG
ATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTGCACACCTCCTGGGA
CGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTTGGCGCCCG
TGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACTTTGGAGGAGCCGTC
GCCGGCGCTGCGCCCGACTCCAAGACCATTGACGACCATCTGGCCGTCCA
GGCCATCATCAGGAGCTACCAGTCACGAGGTCATTTGGCATCTGATCTGG
ATCCGCTTGGAATTTTGACTCGCGAAAAAACCGTCTGCAAGGATGGGCTA
GCACGTCGTGCTAACGAAGATGTGCTCAGGCAGCACTCTGGGTTTTTGTT
TGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCA
TCGGAGGCGATGAGGCTTCGTTGCCCCTAAAGGAAATCCTGAACCGCCTG
GAGAATGTCTACTGTAATAAGATTGGCGTGGAGTTCATGTTCATCAACTC
TCTGGAGCAATGCAACTGGATCCGCAAGCGTTTTGAGACCCCCGGCGTCC
TTAACTTCTCGCCCGAGGAGAAGCGTCTGATCCTGGCCCGTTTGACCCGT
GCCACCGGCTTTGAGGCTTTCCTGGCCAAGAAGTACTCTTCTGAGAAACG
TTTCGGTCTGGAGGGTTGCGAGATCATGATCCCAGCCCTGATGAGATCAT
CGACGTATTCAACGGAGTTGGGGAGTGGGGGTCCGTCATCATGGGCATGC
CCCATCGGTGGACGTTCTTAACACCTTGGCCATGGTATGCCGCAAGCCCT
TGGACCAGATCTTTCACCCAGTTCGCTGGACGGGAGGCTGGCGGATGATG
GCTCTGGGGGATGTCAGGATCACTCTCGGTATAACTTCGAGGGGATTGAA
CCGCGATACAACAAGAACATCCGCCTGGGCTGTCTGGGCAACCCTTCCCA
TCTGGGAGG

FMO08866.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Nc73EF-RF 3718 CG11661-RF 66..1206 9..1155 5105 97.1 Plus
Nc73EF-RH 3742 CG11661-RH 90..1230 9..1155 5105 97.1 Plus
Nc73EF-RJ 4376 CG11661-RJ 973..1573 549..1155 2405 94.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16962476..16962879 632..1040 1595 96.6 Plus
3L 28110227 3L 16959705..16959884 243..422 900 100 Plus
3L 28110227 3L 16959281..16959422 101..242 710 100 Plus
3L 28110227 3L 16960536..16960668 421..553 665 100 Plus
3L 28110227 3L 16959121..16959216 9..104 480 100 Plus
3L 28110227 3L 16962334..16962414 552..632 405 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:28:08 has no hits.

FMO08866.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:28 Download gff for FMO08866.5prime
Subject Subject Range Query Range Percent Splice Strand
Nc73EF-RF 61..1204 9..1159 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:55 Download gff for FMO08866.5prime
Subject Subject Range Query Range Percent Splice Strand
Nc73EF-RH 87..1230 9..1159 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:06 Download gff for FMO08866.5prime
Subject Subject Range Query Range Percent Splice Strand
Nc73EF-RH 90..1233 9..1159 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:06 Download gff for FMO08866.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16959121..16959216 9..104 100 -> Plus
3L 16959285..16959422 105..242 100 -> Plus
3L 16959705..16959884 243..422 100 -> Plus
3L 16960538..16960667 423..552 100 -> Plus
3L 16962335..16962413 553..631 100 -> Plus
3L 16962476..16962879 632..1040 96 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:55 Download gff for FMO08866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16952221..16952316 9..104 100 -> Plus
arm_3L 16952385..16952522 105..242 100 -> Plus
arm_3L 16952805..16952984 243..422 100 -> Plus
arm_3L 16953638..16953767 423..552 100 -> Plus
arm_3L 16955435..16955513 553..631 100 -> Plus
arm_3L 16955576..16955979 632..1040 96 == Plus