FMO08866.5prime Sequence
1159 bp (990 high quality bases) assembled on 2010-08-03
> FMO08866.5prime
CAGTCGACATGCATAGAGCCCACACAGCCTTCAGCCTGGCCTTGTCGCCG
ATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAGAGCAGCAGCAGTCA
GCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCGCACCTACAACTCCG
CAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCTCCTACGTGGAGGAG
ATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTGCACACCTCCTGGGA
CGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTTGGCGCCCG
TGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACTTTGGAGGAGCCGTC
GCCGGCGCTGCGCCCGACTCCAAGACCATTGACGACCATCTGGCCGTCCA
GGCCATCATCAGGAGCTACCAGTCACGAGGTCATTTGGCATCTGATCTGG
ATCCGCTTGGAATTTTGACTCGCGAAAAAACCGTCTGCAAGGATGGGCTA
GCACGTCGTGCTAACGAAGATGTGCTCAGGCAGCACTCTGGGTTTTTGTT
TGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCA
TCGGAGGCGATGAGGCTTCGTTGCCCCTAAAGGAAATCCTGAACCGCCTG
GAGAATGTCTACTGTAATAAGATTGGCGTGGAGTTCATGTTCATCAACTC
TCTGGAGCAATGCAACTGGATCCGCAAGCGTTTTGAGACCCCCGGCGTCC
TTAACTTCTCGCCCGAGGAGAAGCGTCTGATCCTGGCCCGTTTGACCCGT
GCCACCGGCTTTGAGGCTTTCCTGGCCAAGAAGTACTCTTCTGAGAAACG
TTTCGGTCTGGAGGGTTGCGAGATCATGATCCCAGCCCTGATGAGATCAT
CGACGTATTCAACGGAGTTGGGGAGTGGGGGTCCGTCATCATGGGCATGC
CCCATCGGTGGACGTTCTTAACACCTTGGCCATGGTATGCCGCAAGCCCT
TGGACCAGATCTTTCACCCAGTTCGCTGGACGGGAGGCTGGCGGATGATG
GCTCTGGGGGATGTCAGGATCACTCTCGGTATAACTTCGAGGGGATTGAA
CCGCGATACAACAAGAACATCCGCCTGGGCTGTCTGGGCAACCCTTCCCA
TCTGGGAGG
FMO08866.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nc73EF-RF | 3718 | CG11661-RF | 66..1206 | 9..1155 | 5105 | 97.1 | Plus |
Nc73EF-RH | 3742 | CG11661-RH | 90..1230 | 9..1155 | 5105 | 97.1 | Plus |
Nc73EF-RJ | 4376 | CG11661-RJ | 973..1573 | 549..1155 | 2405 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16962476..16962879 | 632..1040 | 1595 | 96.6 | Plus |
3L | 28110227 | 3L | 16959705..16959884 | 243..422 | 900 | 100 | Plus |
3L | 28110227 | 3L | 16959281..16959422 | 101..242 | 710 | 100 | Plus |
3L | 28110227 | 3L | 16960536..16960668 | 421..553 | 665 | 100 | Plus |
3L | 28110227 | 3L | 16959121..16959216 | 9..104 | 480 | 100 | Plus |
3L | 28110227 | 3L | 16962334..16962414 | 552..632 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:28:08 has no hits.
FMO08866.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:28 Download gff for
FMO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nc73EF-RF | 61..1204 | 9..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:55 Download gff for
FMO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nc73EF-RH | 87..1230 | 9..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:06 Download gff for
FMO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nc73EF-RH | 90..1233 | 9..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:06 Download gff for
FMO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16959121..16959216 | 9..104 | 100 | -> | Plus |
3L | 16959285..16959422 | 105..242 | 100 | -> | Plus |
3L | 16959705..16959884 | 243..422 | 100 | -> | Plus |
3L | 16960538..16960667 | 423..552 | 100 | -> | Plus |
3L | 16962335..16962413 | 553..631 | 100 | -> | Plus |
3L | 16962476..16962879 | 632..1040 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:55 Download gff for
FMO08866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16952221..16952316 | 9..104 | 100 | -> | Plus |
arm_3L | 16952385..16952522 | 105..242 | 100 | -> | Plus |
arm_3L | 16952805..16952984 | 243..422 | 100 | -> | Plus |
arm_3L | 16953638..16953767 | 423..552 | 100 | -> | Plus |
arm_3L | 16955435..16955513 | 553..631 | 100 | -> | Plus |
arm_3L | 16955576..16955979 | 632..1040 | 96 | == | Plus |