FMO08867.5prime Sequence
1142 bp (913 high quality bases) assembled on 2010-08-03
> FMO08867.5prime
CAGTCGACATGGCGGCCTACTTGAACCGCACCATCTCGATGGTGACCGGG
CAAACGGGCCCCGCCGACGACGACCGTCACGCCTCCTCCACGGACACGGT
GGACAAATCCGGACCCGGTTCCCCGCTATCCCGGTTCAACTCATCGCTGC
AACAATCCGGCTCCACAATGGCCGCCAATCTGCTACCGGAATCGCGGCTC
TATCAATCCAACGACAAATCACCGCTCCAGATCTTTGTGCGCGCCAAAAA
GAAGATCAACGATATCTACGGCGAGATCGAGGAGTATGTCCATGAGACGA
CCACCTTTATCAACGCCCTGCACGCGGAAGCGGAGATCGTGGACAAGGCG
GAACGGGAGCTGTTCGAAAGCTATGTGTACAAGGTGGCGGCCATTCGCGA
AGTACTGCAGCGGGATCACATGAAGGTGGCCTTCTTTGGACGCACCTCCA
ACGGCAAGAGCTCGGTGATTAATGCCATGTTGCGCGAGAAGATCCTGCCC
AGCGGCATTGGGCACACCACGAATTGCTTCTGCCAAGTGGAGGGCAGCAA
TGGCGGCGAGGCGTATCTTATGACAGAGGGCTCCGAGGAGAAGCTAAATG
TGGTGAACATCAAACAACTGGCGAATGCCTTGTGCCAGGAGAAGCTCTGC
GAGAGCAGTTTGGTGCGCATCTTTTGGCCGAGGGAACGCTGCAGCCTGCT
GCGCGACGATGTCGTCTTTGTGGACTCACCTGGTGTGGATGTGTCGGCCA
TTTTGGACGACTGGATCGATAACCATTGCCTGAACGCCGATGTTTTTGTG
CTGGTTCTTGAATGCCGAGTCAACGATGACACGTGCGGGAGAAGCAGTTC
TTTCACACCGTCTCGCAGAAGCTAAGCAAGCCGACATCTTCATCCTGAAC
AATCGCTGGGATGCTCCGGCAACTGAGCCCGAGTGCAGGATTCGTTTAAG
TCTTCACACACGGAACGCTGCATTCGACTTCCTCCCCAAGGAGCTAAAGG
GGGAGCAACGAGAAGGAGGCGGCCCGAAATGTATTCTTTCTTTTCTGCCA
GGGAAACGCTGCTAGGCGCGCATCAGGAAGGCAAAGGGCCAATTCGCCCC
GCAATTGGGGGCCATGGCGAGGGCTTTCAGATAATCCCACAT
FMO08867.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Marf-RC | 3605 | CG3869-RC | 505..1627 | 5..1133 | 4890 | 96.5 | Plus |
| Marf-RB | 3444 | CG3869-RB | 344..1466 | 5..1133 | 4890 | 96.5 | Plus |
| Marf-RD | 3617 | CG3869-RD | 505..1639 | 5..1133 | 4765 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6366853..6367163 | 5..315 | 1540 | 99.7 | Plus |
| X | 23542271 | X | 6367358..6367648 | 315..605 | 1455 | 100 | Plus |
| X | 23542271 | X | 6367718..6368048 | 605..936 | 1380 | 96.4 | Plus |
| X | 23542271 | X | 6368527..6368666 | 946..1089 | 295 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:41 has no hits.
FMO08867.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:27 Download gff for
FMO08867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marf-RC | 503..1559 | 1..1062 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:32 Download gff for
FMO08867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marf-RB | 342..1398 | 1..1062 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:43 Download gff for
FMO08867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Marf-RB | 342..1398 | 1..1062 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:43 Download gff for
FMO08867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6366851..6367163 | 1..315 | 98 | -> | Plus |
| X | 6367359..6367648 | 316..605 | 100 | -> | Plus |
| X | 6367719..6368057 | 606..944 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:32 Download gff for
FMO08867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6260884..6261196 | 1..315 | 98 | -> | Plus |
| arm_X | 6261392..6261681 | 316..605 | 100 | -> | Plus |
| arm_X | 6261752..6262090 | 606..944 | 96 | -> | Plus |
