FMO08868.5prime Sequence
1165 bp (1072 high quality bases) assembled on 2010-08-03
> FMO08868.5prime
CAGTCGACATGAGGGTCTCTTTGGCACTGTGGGGCACTTTGTGCCTGTGG
GTGGTCACCGCGAATGCACAAGGATTTATACCACCACCCAATGTCGGCCT
TCACAATGGGCCGCCCTTTCACAACTCGCAGCGCCGTCAGCTAAATCTGC
TGCAGTACAATCAGCAAAACTTTGTCCAGGCGGGCGTGGAGCTGCCCATT
CCCCACCGCTCCCAACATGGCCCCCATCCGCAGCACACGCATCTGCATCA
CCAGCAGCAGCCGCAGCAGCAGCACCGCTTCGGGCAGTTCCCACAGCAGC
AGCAGCAGCAGCATCAGCAGCCCCACAGCAATCAGCAGTTCCAACGTTCG
ACCCAAAATCAACTTCAAACCGCTCCACAGTTCCCGCAGCAGCAGCAGCA
GTTGCCCTCTCCTGCCGCCGGTTTGGATCTGCATCATCAAAACTTCTTGG
ACTTGCGCAACTTTGCTGGCTCCCAGCAGCAGCAGCCAAATCAGCAACAA
CATCAGCAGCGCCATAAGCAATTTGATTCCCGCTTGCAGTCCACTGCCTT
CCCGCCACAACCATCTCCGGAAACTTACCAGCAACAGCAATTGCAGCAAC
AGCAACAGCAGCAGTTTGCCTACCAGCAGCCCCAGCAGTTTGGACCACAG
GTTCTGCCCCAGACCACACAGAAGCTGCCCAGCCAGGCACCCGTGCCCAC
TTTCCAGACGATTCCCCAGCAGCAGAGCCAGTTTAACTACCAGCCACAGT
CCAGTCAGCAGCAGCAGTATCAGCTGACTCCCCAATTGGGATTGCCAGTG
CCGCAGATATTTAGCAATGTTCAGGCACACCCTTCCCGGAGCCAACCAGA
GGAAGCTTCCAGCAACAGCAGCAGCCAGTGCAGCAGCCTCAGTTCCAGCA
TCATTTGTTATGCTCCATCGCCAATTCAGCCACAGGCCCAACCAGCTGAC
CAGGAATACAAGCAAAAGCTAATCCAGAGCACGAGCATTTGTGGCCAAGC
AGTACGAAAAGTCGCAGCACAAGGTGCGTCAGCAGCACGAAAATTTCCTT
CTGAAGCAGCACCAAATCAAGCACACATCCTGCCGAACATGGGTACCCAC
ACATGCCAACATACCAAGAACTCACCATGGTGGGCAGCACGGGACAGTGA
AGAACCGGTTGTAAT
FMO08868.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43333-RA | 4314 | CG43333-RA | 379..1505 | 8..1128 | 5290 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14166533..14167104 | 1090..525 | 2515 | 98.4 | Minus |
| 2L | 23513712 | 2L | 14167168..14167583 | 525..110 | 2065 | 99.8 | Minus |
| 2L | 23513712 | 2L | 14180206..14180308 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..7016 | 159..507 | 310 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2270..2645 | 157..521 | 282 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2981 | 249..944 | 267 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2974 | 474..1079 | 253 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2922 | 225..774 | 247 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6952 | 250..494 | 224 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6945 | 474..658 | 214 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6914 | 475..678 | 206 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2537 | 296..521 | 188 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2980 | 231..613 | 188 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..7079 | 474..771 | 186 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7034 | 288..630 | 183 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2522 | 862..1074 | 166 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2966 | 253..638 | 163 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6916 | 860..1065 | 162 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2513 | 485..685 | 159 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6918 | 860..987 | 152 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6944 | 474..612 | 144 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6892 | 474..521 | 141 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2973 | 259..522 | 139 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6951 | 833..1069 | 133 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1571 | 474..521 | 132 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1102 | 478..521 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6949 | 860..1044 | 129 | 58.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1119 | 843..903 | 122 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2530 | 860..1064 | 117 | 57.5 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 978..1011 | 474..507 | 116 | 82.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7995 | 480..520 | 115 | 75.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9439 | 480..520 | 115 | 75.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1140 | 860..903 | 112 | 72.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5630..5682 | 475..523 | 111 | 73.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7085..7137 | 475..523 | 111 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1493..1547 | 468..521 | 110 | 69.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 112..151 | 470..509 | 110 | 75 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11290..11329 | 470..509 | 110 | 75 | Plus |
FMO08868.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:26 Download gff for
FMO08868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32972-RA | 365..1517 | 1..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:59 Download gff for
FMO08868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43333-RA | 370..1522 | 1..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:18 Download gff for
FMO08868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43333-RA | 370..1522 | 1..1146 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:18 Download gff for
FMO08868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14167168..14167582 | 111..525 | 99 | <- | Minus |
| 2L | 14166478..14167103 | 526..1146 | 96 | <- | Minus |
| 2L | 14180206..14180315 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:59 Download gff for
FMO08868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14166478..14167103 | 526..1146 | 96 | <- | Minus |
| arm_2L | 14167168..14167582 | 111..525 | 99 | <- | Minus |
| arm_2L | 14180206..14180315 | 1..110 | 96 | | Minus |
