FMO08871.5prime Sequence
760 bp (654 high quality bases) assembled on 2010-08-03
> FMO08871.5prime
CAGTCGACATGGCCGAAGCCCATGCCGCCGTGGCATTCTCGTTTGCCATC
ACCCATGAGGGCTTCGACATCAACTATGACCACGAGGTGCTCAATTTGGT
GTGGAACTCAGGAGTTCGTTCCTGGAAAAAGCGATTGGCTCGCGCAAGGA
ACGGCGTACGCAATGGCGTCTATCCGGTTCACATCCAGAGCCTCTGGTTG
ATCTCAGCAATAGCGCTGGGTCTACACTTTGCGGGCTACCAGGCTCCATT
CAATCTGACCAACCGTATACTGGTGCACCTGCCTTCCAACACGATAAACT
GGCAGGTTACCGCCTGCTTTTTGGCCGCTCTGGTGGTCTGGCTATCGATC
TGTTTCACCATGAGATACACTCTCAAGCTGCTGCTCATGTACAAGGGCTG
GATGTACGAGTCCAGAGCTCCCGGTAGTCGTGTCTCTCTGCCCACCATGT
TGTGGGTGGCAGTGGTGCGGGTTCTATCTAGTTGGAACAAACCGGGTCTG
TACAGCTTCCAGGGTTCTCTGCCCAGGCTGCCACTGCCCTCCGTTAAAGA
CACGATGACCAGGTACTTGCGCATTGTTCGACCGCTGCTTGATGATGAGA
ACTACACGCGCATGGATCGCCTGGCCAAAGAATTCGAACAGACCATCGGC
AAGAAGCTGCAGTGTTACCTCATCCTCAAGAGCTGGTGTTCCTCCACTAC
GTGTCGGATTGGTGGGAGGAGTACGTCTACCTTCTTGGTCCCAGTCCCCT
CTGCTGAACA
FMO08871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RC | 2888 | CG12891-RC | 250..1003 | 9..760 | 3600 | 98.7 | Plus |
| whd-RA | 2882 | CG12891-RA | 250..1003 | 9..760 | 3600 | 98.7 | Plus |
| whd-RD | 2907 | CG12891-RD | 269..1022 | 9..760 | 3600 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10472607..10473213 | 754..149 | 2865 | 98.5 | Minus |
| 2R | 25286936 | 2R | 10473269..10473409 | 149..9 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:16 has no hits.
FMO08871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:33 Download gff for
FMO08871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CPTI-RA | 246..1003 | 1..759 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:04 Download gff for
FMO08871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 264..1021 | 1..759 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:21 Download gff for
FMO08871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 264..1021 | 1..759 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:21 Download gff for
FMO08871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10472601..10473212 | 150..759 | 98 | <- | Minus |
| 2R | 10473269..10473414 | 1..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:04 Download gff for
FMO08871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6360106..6360717 | 150..759 | 98 | <- | Minus |
| arm_2R | 6360774..6360919 | 1..149 | 97 | | Minus |
