FMO08872.5prime Sequence
1130 bp (986 high quality bases) assembled on 2010-08-03
> FMO08872.5prime
CAGTCGACATGGATCCATTTGTTGGCTGGTTTCAGAAGGAACAGGAGGGA
CCATCGCTGTGCACATGGTTAAAGATTTGGGAGACGAATGCCCAAGAGAT
GGGCGCATTGCTTAATCAACAGCTACAGCAGGCGACGACGATCAACGGGA
GCACGAGCAGCAGCAGCAGCAGCAGCAATAGTGGTAACAACAACAACAAC
AACAACAATAACATCATCAATAACACTATCACCAACACGACCAATAACAC
TGGTAACAATTCATCGGCCAAACCCTACTTATCGCGACCCTACAGCTCGC
TAAATCGGGTGCTCAATTTCCGAGCGGATTCCCTGGAGATCCTGCAGCAG
CAACAACAACAGCAGCAGCTCAACGGGACCACTCAGCGCAACAGCACCAA
CATCAATACCACAAGCGGCGGCAGCACTAGCTCGTCGGCAGATTCCACCA
CGAATCGGGACAATAACTCACCCGCCAATAGCAGTTCAACCAACGGACCC
GGAGCAGGAACGGGAACGTCAACAGGAGCAGGAGGTACCGGTACAAATAG
TCCGGCGACGACAGCGTCAAGCACAGCTGCGACCACGACTGGTCCAGCCA
CTAGTATGAGCGACACCAGCAACAACCCGCCACAATCAACGACCACGCCC
GCCAGCCGCACGAACAGCATCTACTACATTCCATCGCGGAAGAAACGACC
GGAGAACAAGGCTGGCGGAGCCCACTACTATATGAACAACCATATGGAGA
TGATCGCCAAGTACAAAGGGCGAACCGTGGCGCAAGCCGGACTATCCGTA
TGGCGAGGGCGTTATCGGGCTGCACGAGGAGATCGAGCATTTCTATCAGT
ACGTCTGCCCACGCCCTGCGAACACGCCACCCGCACGAGTGTCTAGCGTA
TCGAGGCCGTTGTCCATTCCATCTGGCCACAGGCAGTAGTCGAGATCTTG
TGCTCCTTTCGCACTTGGCCTCTTTTTGCCCACCTCCGACATAGATCTCG
TTGTGTTAGGTTTGTGGGAAAGCTGCCGCTGAAAACGCTTGATTCGAGCT
TAGTGAGCCCGTGATTCGTCGAGGCTTGTACGTGCGTGTTTCTGACAGTG
CATCAAGGCCCACTCACTCAAGCTGACGGA
FMO08872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf4-1-RJ | 6812 | CG11265-RJ | 586..1709 | 9..1130 | 5060 | 97.4 | Plus |
| Trf4-1-RI | 4238 | CG11265-RI | 551..1674 | 9..1130 | 5060 | 97.4 | Plus |
| Trf4-1-RH | 3975 | CG11265-RH | 288..1411 | 9..1130 | 5060 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8563373..8564377 | 9..1011 | 4680 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 18:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2404..2962 | 115..678 | 368 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2578..2986 | 130..524 | 298 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7050 | 346..678 | 281 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2644 | 172..530 | 248 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2662 | 342..678 | 246 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6932 | 342..538 | 243 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6832..7015 | 344..531 | 236 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2666 | 345..642 | 224 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7079 | 342..656 | 222 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2665 | 342..669 | 199 | 56.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1180 | 342..455 | 198 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6884 | 342..431 | 192 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6953 | 342..485 | 189 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1111..1179 | 344..414 | 125 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1584 | 341..369 | 118 | 89.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 909..937 | 341..369 | 118 | 89.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12087..12115 | 341..369 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1560..1591 | 342..374 | 117 | 87.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1602 | 345..414 | 110 | 70.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1136..1166 | 342..372 | 110 | 83.9 | Plus |
FMO08872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:33 Download gff for
FMO08872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11265-RE | 391..1522 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:00 Download gff for
FMO08872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf4-1-RH | 279..1410 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:16 Download gff for
FMO08872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf4-1-RH | 279..1410 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:16 Download gff for
FMO08872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8563364..8564375 | 1..1009 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:00 Download gff for
FMO08872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8457397..8458408 | 1..1009 | 98 | -> | Plus |
