FMO08873.5prime Sequence
1120 bp (888 high quality bases) assembled on 2010-08-03
> FMO08873.5prime
CAGTCGACATGACCAAGAGGGACCTACAGCAGTACTATCGCTACTACAAC
ATGAACAAGAACCGTGGACAATTCAAGAAGGTTGTGATTGTGATCTTCGC
CCTCTGCGTGTTTTCCTACCTATGTGTGGACTACAATCTGAGGACGAAAC
TACTTCGTTTCCGTGATGGATTCGATTTTATGGCCCGCATCGAGGACCAC
TATGGTGGAAATGTGACAACGGCCTATTTCGTTGACACGACGGGCTGCCG
GATGCCACACTTTGAGGTCAGCGACGACACCATTGCCCAGTTCATTTTCA
AGCCACGTCCGTACAGCTGCAACAGAGCTCTGATCCGGACGAGCGACACA
ATTCCCGGACAGCTGCATCTCAATCTGGAGGCCAGTGAGCTGCTCGCATA
CTACAACATCAGTGACCTGTCCTCCGTTAATTGCAACTATACGGAGGTGA
AGCGCAAAACCGATTCTAGTAACACCCACAGTCCGGCAGTGAGTTTTAAG
CTGGACAAAGTTATGAAACTGCCTCTCAGCTCGGAGTTCATTTGCATGTG
GTGCTATGATTCACTGGACAAACTCTTCTACAAGGACTGTCATTTTTTTG
CAGTCGATAAGCCAAGGATTAGGCCCCCACTTAAGACTGGAACCGATAGG
GTGAGCTTCAACAAGAGCAAGGAGGAGCAGGAACGGCTATCCCGTAATGA
TACTCGGCATGGATAGCCTGTCGTATCTAAATTTCCTGCGCCAGATGCGC
CGCACAGCGAACTACGTCCGTAAGCATCTGTCCCACGTGGAATTTGGGGC
TAATAACAAGGTGGGCGACAATACGTTTTCCCAATCTCGTGCCCCTGCTA
AGTGGCCTGGAATGATCAGGAACTTGAATCTGGGCCTGCACGCCAAAGAC
ATTGCGATCCTATGATAGGTGCTCATTCATTTGGAACGCTACCAGCAACT
GGGTTATCGCTCCCTTTTCGCCGAGGATGTGGCAATGCTCTCGTGCATTC
AATTACAATCAAATGGGTCCGAAGCAGCCTACGGAATATTTATCTGCAAC
CTATGATATGCGAATGGGAAAAGACTGTGGCTCTTCATAAAGGATACCTC
AACTGGCCCTGGTGCCAGTG
FMO08873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16854-RB | 2755 | CG16854-RB | 461..1549 | 9..1103 | 4900 | 97.4 | Plus |
| CG16854-RD | 3048 | CG16854-RD | 461..1549 | 9..1103 | 4900 | 97.4 | Plus |
| CG16854-RC | 2350 | CG16854-RC | 56..1144 | 9..1103 | 4900 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11088386..11089455 | 9..1081 | 4585 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:28:02 has no hits.
FMO08873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:22 Download gff for
FMO08873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RA | 51..1144 | 2..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:50 Download gff for
FMO08873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RC | 51..1144 | 2..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:04 Download gff for
FMO08873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RC | 51..1144 | 2..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:04 Download gff for
FMO08873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11088381..11089410 | 2..1034 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:50 Download gff for
FMO08873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11088381..11089410 | 2..1034 | 97 | -> | Plus |
