FMO08874.5prime Sequence
1109 bp (968 high quality bases) assembled on 2010-08-03
> FMO08874.5prime
CAGTCGACATGCCTTCTAGCGATCCCCTGCCGCCCAAGGAGGGCGCGCTC
TTCCGCAAGCTACTTAAATGCTACGAACTGAAGCAGTACAAAAATGGCCT
TAAACTGGCCAAGCAGATCCTGTCCAACCCCAAGTACATGGAGCACGGCG
AGACGCTGGCCATGAAGGGGCTTACTCTGAACGGACTGGGGCGCCGCGAG
GAGGCCTACAAGTATGTGCGTCTGGGTCTGCGAAACGACCTGCGCTCCCA
CGTTTGCTGGCACGTCTACGGACTGCTCCAGCGCAGCGACAAGAAGTACG
ATGAGGCCATCAAGTGCTACCGCAACGCGCTCAAGTGGGAGAAGGATAAC
CTGCAGATCCTGAAGGACCTGTCGCTTCTCCAGATCCAAATGCGCGACCT
CGAGGGCTACAAGGAGACGCGCCACCACCTGTTCACGCTGCGTCCCTCGC
AGCACGCCTCCTGGATCGGTTTCGCCATGAGCTACCATCTGCTGGGTGAC
TACGACATGGCCAACAGCATCCTGGAGACGTTCAGCCAGTCGCAAACGTC
GATTGAGGCGCACGATTATCGGCACTCGGAGCTGCTGCTCTACCAGAACC
AGATACTCATCGAGTCGAATCGTCTGCAGCAGGCCGTGGACCACCTGACC
AAATACCAGGGCCAGATCGTCGACAAGCTGGCCGTTCGCGAGACCATGGG
TGATCTGTACATCAAGCTGCAGCAGCAGGAGAAGGCTGTGCCCATCTTTG
AGTCTCTGATCCGCCGCAATCCGGAGAATGTGCTCTACTACGAGCAGTAC
ATTGCCGCCCGCCAGGTGACCGACTCAAGCGCCGTGGTGTCGATCTATCG
CGTGTTCCAGAGCAGTATCCGCGCGCCCTGTGCCCTCGCCGCCTGCCTTT
GAACATCGCCAACGGCGACGAGTTTCGCGTCGTGACCGACGAGTACCTGG
GCCTGCGGTTTGCGTAAGGCCTTCCGCCGCTATTTGTCAACTGGCGCCTC
TGTCACAAAATACGGAGAGGGCGGGCGTATATCAAGGGAGCTGGAGCCTG
AGTAATTCGAGAAACCTAACGGTTCGGCACATTCTCACGAAATGCCAATC
CCGGAATTC
FMO08874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nat1-RB | 4013 | CG12202-RB | 639..1743 | 9..1109 | 4885 | 96.8 | Plus |
| Nat1-RA | 3738 | CG12202-RA | 364..1468 | 9..1109 | 4885 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19481018..19481507 | 66..555 | 2450 | 100 | Plus |
| X | 23542271 | X | 19481598..19482035 | 555..991 | 1985 | 98.4 | Plus |
| X | 23542271 | X | 19480622..19480678 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:01 has no hits.
FMO08874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:21 Download gff for
FMO08874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 465..1508 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:09 Download gff for
FMO08874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 359..1402 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:50 Download gff for
FMO08874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 359..1402 | 1..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:50 Download gff for
FMO08874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19480617..19480678 | 1..65 | 93 | -> | Plus |
| X | 19481018..19481506 | 66..554 | 100 | -> | Plus |
| X | 19481598..19482035 | 555..991 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:09 Download gff for
FMO08874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19374650..19374711 | 1..65 | 93 | -> | Plus |
| arm_X | 19375051..19375539 | 66..554 | 100 | -> | Plus |
| arm_X | 19375631..19376068 | 555..991 | 98 | -> | Plus |
