FMO08875.5prime Sequence
675 bp (675 high quality bases) assembled on 2010-08-03
> FMO08875.5prime
CAGTCGACATGTCTGATAAAACCGTCGAGTTGATGAATCCCCATTTGGAA
ACAGCACGATCGGATTATTTATACCACCTGGACATCAATGTGGCCAATAC
CCGAGACACCAGTGAGTTACAGAATAGGTTCGGCGATGTTAGGGTCATCT
GCATGGGTGGAACGGGCTCCAGAATGCGGCAGTTAGCCCTTTACCTAAGA
GATATTCTGGTAGTGTCGGAGTCCGGCGATCCGGTGGATTTGTGCGAGCG
TGGCAACCGATATGCCATGTACAAGGTGGGTCCGGTACTGTGCGTGAGCC
ACGGCGTTGGATCCTCCTCCTTCAGTGTCGTGCTGCACGAGCTGATCAAG
CTCCTCAAATATGCGCGGTGCCAGGACCCCGTCCTGCTTCGGATTGGCAC
CTGCGGAGGACTTGGCGTCCCTCCCGGCACAGTGGTGGCCAGCAAAAATG
CCTTCAATGGTCTGCTGCGCAACGAGCATGAAATCGCTATTCTCGGACAG
CGAGTGGTGCGTCCGGCTCAGTTTTCCGAGGACGTGATCAGGGATTTACT
TGCATTCGGTGTCGACGCCAACGACGGATTTCAGACCATAAGTGCCAACA
CAATGGGAACAGATTGCTTTTACGAAGGTCAAGGTCGCACCGATGGAGCC
ATATGCGAGTACTCGGAGAAGGATA
FMO08875.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17224-RD | 1118 | CG17224-RD | 125..791 | 9..675 | 3290 | 99.6 | Plus |
| CG17224-RC | 1438 | CG17224-RC | 201..867 | 9..675 | 3290 | 99.6 | Plus |
| CG17224-RB | 1251 | CG17224-RB | 258..924 | 9..675 | 3290 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3017383..3017726 | 486..143 | 1675 | 99.1 | Minus |
| 2L | 23513712 | 2L | 3017177..3017320 | 629..486 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 3017778..3017903 | 145..20 | 630 | 100 | Minus |
| 2L | 23513712 | 2L | 3017072..3017121 | 675..626 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:36 has no hits.
FMO08875.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:20 Download gff for
FMO08875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17224-RB | 230..904 | 1..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:13 Download gff for
FMO08875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17224-RB | 249..923 | 1..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:05 Download gff for
FMO08875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17224-RB | 249..923 | 1..674 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:05 Download gff for
FMO08875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3017780..3017903 | 20..143 | 100 | | Minus |
| 2L | 3017073..3017119 | 628..674 | 100 | <- | Minus |
| 2L | 3017179..3017320 | 486..627 | 100 | <- | Minus |
| 2L | 3017384..3017725 | 144..485 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:13 Download gff for
FMO08875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3017780..3017903 | 20..143 | 100 | | Minus |
| arm_2L | 3017073..3017119 | 628..674 | 100 | <- | Minus |
| arm_2L | 3017179..3017320 | 486..627 | 100 | <- | Minus |
| arm_2L | 3017384..3017725 | 144..485 | 99 | <- | Minus |
