FMO08877.5prime Sequence
491 bp (491 high quality bases) assembled on 2010-08-03
> FMO08877.5prime
CAGTCGACATGTCGAATTTCAATCGCATTCTGATCGTCATTGTTATCGGA
TTGGCACTAGTTCATTTTAGTGCTGTGGATGCCCAGGCCGGAACGGTGCA
CTGGAACAATGGAAATGCGGCCGGCGTTGGCGTCTATTCGAGCGCCCAGT
CCGGCGGGATGCATCCGCCGGGAAGTCTGAGTGGCCAGGATCCGCAGTTC
AGCTACGGATACGCCGGCATCGATTCGCGTGGTACCTACGGTGGAGCGGG
TGGCAATGGAGCCTACTACGTGAGCGGTACGGACGAGCACGGTCGTCCCT
TCTCCTACAACAACCAGGTGGGCCATCCCGGCCAGCCGGGCTACATGGGC
GTACGGCCGGACCCCAACTACCCGGGTACCTATGGCTACCAGAATGGCGG
AGCAATCATCGGCAGCTCGGTGGGCGTCACCGTGACCATAGCACTTGGAT
TGGCCTTGGGCGGCATGAGATTTGCAAGCTTTCTAGACCAT
FMO08877.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12655-RA | 611 | CG12655-RA | 35..501 | 7..473 | 2335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19958503..19958915 | 473..61 | 2005 | 99 | Minus |
| X | 23542271 | X | 21156367..21156618 | 473..222 | 1065 | 94.8 | Minus |
| X | 23542271 | X | 19910279..19910518 | 473..222 | 985 | 93.7 | Minus |
| X | 23542271 | X | 19915443..19915682 | 473..222 | 985 | 93.7 | Minus |
| X | 23542271 | X | 19939154..19939393 | 473..222 | 925 | 92.1 | Minus |
| X | 23542271 | X | 19929338..19929577 | 473..222 | 910 | 91.7 | Minus |
| X | 23542271 | X | 19920597..19920732 | 473..338 | 680 | 100 | Minus |
| X | 23542271 | X | 19934454..19934589 | 473..338 | 680 | 100 | Minus |
| X | 23542271 | X | 19944306..19944441 | 473..338 | 680 | 100 | Minus |
| X | 23542271 | X | 19949036..19949171 | 473..338 | 680 | 100 | Minus |
| X | 23542271 | X | 19953771..19953906 | 473..338 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 6701328..6701436 | 427..319 | 470 | 95.4 | Minus |
| X | 23542271 | X | 19959301..19959369 | 75..7 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:40 has no hits.
FMO08877.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:18 Download gff for
FMO08877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12655-RA | 14..492 | 1..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:30 Download gff for
FMO08877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12655-RA | 29..507 | 1..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:12 Download gff for
FMO08877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12655-RA | 29..507 | 1..479 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:12 Download gff for
FMO08877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19958497..19958900 | 76..479 | 99 | <- | Minus |
| X | 19959301..19959375 | 1..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:30 Download gff for
FMO08877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19852530..19852933 | 76..479 | 99 | <- | Minus |
| arm_X | 19853334..19853408 | 1..75 | 94 | | Minus |
