FMO08878.5prime Sequence
1133 bp (978 high quality bases) assembled on 2010-08-03
> FMO08878.5prime
CAGTCGACATGGCAAACGATTCGGATAGAAACGATGGCCGGGAGAATGGC
AAGAAGAACAACAAGAACAATAAGAAGAACAACAAGAAGAAGAACGGAAT
GCTGAAGCCGCTTGGTAAGAAGACCGAGAAGATTGAGAAGAAAATGAAGG
AGATCAAGTGCCACAAGGCGCACTTTAACGAAATGACCGACTGCTTGCAT
AAGCTTTTGACTCCAGTGACGCCCAGTAGCATGACCAAGAACACAAACGT
CGAGAATCCCAATAATCTGGAAGAAATGGACGACGGTAATGCTGCTGACT
CTGTCGTCGCCATGGACGAGGGCCAAGATGATGCTGCTACTGGTGGAGAT
GGTGCTGCAGTTCCATGCGCTGGTGCTGCAATTGGTCGTGATTGGAATGC
AGTTGCAGGTGTTGGTACTGGTGCTGGTACTGGAGGAGATTGGGTTGCAG
GTGCTGAAGCTGCTACTGGAGGAGATGGTGCTGCAGTTGCTGTTGTTGGT
GCTGCAACTGATGGAGATGGTGCTCCATTTGCAGGTGCTAATGCTGGTGA
AGATTTGGCTGCAGTTGCAGGTGCTGGTGCTGGTGCTGCTACTGGAGGAG
ATGATGCTGGAGTTGCACGTGCTGTTCCTGCTACTGATGGAAATGGTGCT
CCAGATGGTGTTCCAGTTGCAGGAGCTGTTCTTGCTACTGATGGAAATGG
TGCTCCAGTTGCAGGTGCTACTGATGTAAATGGTGCTCCAGTTGCAGGAG
CTGTTCCTGCTGCTGATGGAAATGGTGCTCCAGTTGCAGGTGCTATTGAT
GGAAATGGTGCTCCAGTTGCAAGAGCTGTTCCTGCTGCTGATGGAAATGG
TGCTCCAGTTGCAGGTGCTTTTCCTGCTACTGATTGAAATGGTGCTTCAG
TTGCATGTGCTTTTCCTGCTACTGATGGAAATGGTGCTCAGTTGCAGTGC
TTTTTCCTGATACTGTTTGGAGATGGTGCTTCAGTTGCTGTTGCTGGTGC
TGCAACTGATGGTGATGGTGCGGGTAAAGGTCTAGCACCCAGCTGCGGTC
CTGGTACTTCATGTTGATGTGCAAACTTAACGCATTTCTTGCTTTTGGGA
ATGATGGATTGTTTGCCGGAGTGTATCACTCTT
FMO08878.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34434-RB | 1691 | CG34434-RB | 205..1293 | 9..1091 | 4950 | 97.5 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 926..1208 | 655..928 | 955 | 89.8 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 851..1133 | 730..1021 | 865 | 87.4 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 912..1184 | 683..945 | 710 | 84.4 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 879..1175 | 716..1021 | 660 | 82 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 651..1206 | 329..884 | 645 | 75.3 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 696..1208 | 332..844 | 565 | 75.6 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 525..1091 | 455..1021 | 505 | 74 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 528..985 | 500..947 | 460 | 75.1 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 912..1208 | 461..769 | 445 | 77.7 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 987..1191 | 587..794 | 420 | 80.2 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 657..910 | 716..947 | 310 | 77.2 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 783..990 | 791..995 | 285 | 77.2 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 937..1191 | 444..719 | 285 | 74.3 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 987..1188 | 461..662 | 275 | 75.7 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 1012..1208 | 444..640 | 235 | 74.6 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 1054..1204 | 444..594 | 230 | 77.6 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 640..847 | 741..939 | 225 | 74.5 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 667..719 | 969..1021 | 220 | 94.3 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 1138..1216 | 444..522 | 215 | 84.8 | Plus |
| CG34434-RB | 1691 | CG34434-RB | 1096..1198 | 444..546 | 185 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5615017..5615804 | 1032..245 | 3620 | 97.8 | Minus |
| X | 23542271 | X | 5615931..5616166 | 244..9 | 1180 | 100 | Minus |
| X | 23542271 | X | 5615037..5615319 | 928..655 | 930 | 89.4 | Minus |
| X | 23542271 | X | 5615112..5615394 | 1021..730 | 775 | 86.7 | Minus |
| X | 23542271 | X | 5615068..5615333 | 939..683 | 625 | 84.4 | Minus |
| X | 23542271 | X | 5615039..5615594 | 884..329 | 520 | 74.7 | Minus |
| X | 23542271 | X | 5615070..5615366 | 1021..716 | 520 | 81.3 | Minus |
| X | 23542271 | X | 5615269..5615720 | 939..455 | 385 | 73.4 | Minus |
| X | 23542271 | X | 5615054..5615202 | 794..655 | 380 | 85.2 | Minus |
| X | 23542271 | X | 5615096..5615333 | 719..461 | 350 | 78.4 | Minus |
| X | 23542271 | X | 5615057..5615258 | 662..461 | 275 | 75.7 | Minus |
| X | 23542271 | X | 5615107..5615252 | 654..509 | 265 | 78.8 | Minus |
| X | 23542271 | X | 5615037..5615233 | 640..444 | 235 | 74.6 | Minus |
| X | 23542271 | X | 5615041..5615191 | 594..444 | 230 | 76.8 | Minus |
| X | 23542271 | X | 5615395..5615588 | 900..716 | 225 | 76.8 | Minus |
| X | 23542271 | X | 5615330..5615394 | 911..847 | 220 | 89.2 | Minus |
| X | 23542271 | X | 5615398..5615540 | 939..797 | 220 | 76.9 | Minus |
| X | 23542271 | X | 5615526..5615578 | 1021..969 | 220 | 94.3 | Minus |
| X | 23542271 | X | 5615029..5615107 | 522..444 | 215 | 84.8 | Minus |
| X | 23542271 | X | 5615191..5615258 | 654..587 | 190 | 85.3 | Minus |
| X | 23542271 | X | 5615395..5615462 | 858..791 | 190 | 85.3 | Minus |
| X | 23542271 | X | 5615047..5615149 | 546..444 | 185 | 78.6 | Minus |
Blast to na_te.dros performed 2014-11-28 19:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..3031 | 1066..350 | 569 | 56.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2235..2940 | 986..288 | 545 | 57 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..3018 | 1017..323 | 531 | 57.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2832 | 801..291 | 523 | 58.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2999 | 967..292 | 498 | 56.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2250..2820 | 888..327 | 483 | 58.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6435..7200 | 1123..332 | 479 | 55.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2776 | 787..326 | 477 | 59.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2469..3031 | 1020..452 | 443 | 57.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7119 | 669..284 | 413 | 60.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6996 | 615..329 | 387 | 63.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2594..3037 | 1003..551 | 365 | 57.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..7199 | 1025..564 | 357 | 58.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6950 | 566..327 | 352 | 62.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2544 | 594..351 | 342 | 63.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2514 | 532..330 | 328 | 64.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6972 | 557..298 | 328 | 61.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6702..7435 | 1077..355 | 321 | 54.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2481..3034 | 1023..494 | 318 | 55.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6920 | 524..327 | 315 | 62.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..3031 | 1023..602 | 287 | 55.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6665..6893 | 561..327 | 287 | 60.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2530 | 505..290 | 277 | 61.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2743..3045 | 1018..719 | 230 | 56.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1154 | 524..420 | 185 | 65.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1592 | 547..473 | 179 | 72.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..7199 | 1113..666 | 177 | 55.2 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 762..1031 | 735..467 | 166 | 55.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1501..1613 | 521..410 | 165 | 65.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1145 | 548..474 | 150 | 66.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1148 | 1021..941 | 134 | 66.7 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3233..3369 | 616..482 | 130 | 58 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1548..1586 | 1020..982 | 123 | 79.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7357..7417 | 588..529 | 113 | 67.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1158 | 1069..968 | 112 | 60.8 | Minus |
FMO08878.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:18 Download gff for
FMO08878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34434-RB | 197..1210 | 1..1014 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:56 Download gff for
FMO08878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34434-RB | 197..1210 | 1..1014 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:59 Download gff for
FMO08878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34434-RB | 197..1210 | 1..1014 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:59 Download gff for
FMO08878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5615035..5615804 | 245..1014 | 98 | <- | Minus |
| X | 5615931..5616173 | 1..244 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:56 Download gff for
FMO08878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5509964..5510206 | 1..244 | 98 | | Minus |
| arm_X | 5509068..5509837 | 245..1014 | 98 | <- | Minus |
