FMO08880.5prime Sequence
1121 bp (975 high quality bases) assembled on 2010-08-03
> FMO08880.5prime
CAGTCGACATGATATTACTAAATTGCCTAGTAATATGCCTGTGCATATTT
TCCTGTGGTGCCCAGGACTCTTCCTTGGACAAATTGATATCGGACATCTT
TAAAACGGACGAAACACCCAAACCATCATCCCCTCCCCCGCCAGTGGTGA
ACCCCAAGGATTCGTCCGGTAGCACGGGATCCGAAAACGGAGGATCCAGT
TCAACGCAGTACCAGTCCTGTGGCGATCAAAAGGAGTGTGTTCCTCGCTG
GTTGTGCGCCAATGATACGATTAACACCAGTGGCGATGGTATCATTGACA
TTCGACTTGGTACGGACGCCGAATGCAAGAACTATTTGGATCTTTGCTGT
GATCTGCCCAACAAGAGAAAAGATCCGATTTTCGAGTTTAAGCCTGATCA
TCCCGAGGGCTGCGGTTACCAAAATCCCAACGGCGTTGGCTTTAAGATCA
CTGGAGCTGTCAACCAGGAGGCCGAATTCGGCGAATTCCCCTGGATGCTG
GCCATTCTACGGGAAGAAGGCAACCTTAACCTGTACGAGTGTGGAGGAGC
ATTGATAGCTCCCAATGTGGTTCTGACCGCGGCGCATTGCGTTCACAACA
AACAGCCCAGTAGCATTGTTGTGAGAGCTGGCGAATGGGATACGCAAACG
CAGACTGAGATCAGAAGGCACGAAGACCGATATGTCAAGGAAATAATCTA
CCATGAGCAGTTCAACAAGGGATCGCTCTATAACGATGTGGCTGTCATGC
TGTTGGAAAGTCCATTCACCCTCCAGGAGAACATTCAGACCGTTTGCCTG
CCCAATGTGGGTGATAAATTCGATTTCGATCGCTGCTATGCCACCGGCTG
GGGCAAGAACAAGTTCGGCAAGGATGGGGAATATCACGTTATTCTGAAGA
ATTCGACATGCCCGTGGTGCCCGAGCAGCAGTGCGAGACGAATCTGCGCG
AAACTCGACTCGGCAGGCATTTCATTCTGCACGACAGCTTCCATTGCGTC
GCGGTGAATATGACAAGACACCTGCTATGTGATGTGGCTCCCATGGTGTG
TTCAATTGCAGTCAGAAGAACCGCCTTCCAGTCTGCCGCATGTGCCCTGG
GCATCGATGCGGGCGAGTGTA
FMO08880.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5390-RB | 1372 | CG5390-RB | 59..1173 | 9..1112 | 4940 | 97 | Plus |
| CG5390-RA | 1401 | CG5390-RA | 88..1202 | 9..1112 | 4940 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10304392..10304770 | 998..621 | 1770 | 98.4 | Minus |
| 2L | 23513712 | 2L | 10305149..10305505 | 365..9 | 1770 | 99.7 | Minus |
| 2L | 23513712 | 2L | 10304827..10305085 | 621..363 | 1265 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:55 has no hits.
FMO08880.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:17 Download gff for
FMO08880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5390-RA | 83..1071 | 2..991 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:07 Download gff for
FMO08880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5390-RA | 83..1071 | 2..991 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:47 Download gff for
FMO08880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5390-RA | 83..1071 | 2..991 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:47 Download gff for
FMO08880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10304399..10304769 | 622..991 | 98 | <- | Minus |
| 2L | 10304827..10305082 | 366..621 | 99 | <- | Minus |
| 2L | 10305149..10305512 | 1..365 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:07 Download gff for
FMO08880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10304399..10304769 | 622..991 | 98 | <- | Minus |
| arm_2L | 10304827..10305082 | 366..621 | 99 | <- | Minus |
| arm_2L | 10305149..10305512 | 1..365 | 98 | | Minus |
