FMO08881.5prime Sequence
1089 bp (919 high quality bases) assembled on 2010-08-03
> FMO08881.5prime
CAGTCGACATGTCGACACGGAAAAAGATGGGGAGCTGCTCCAATGCCATC
GAGAAGGGAAATTCCCCGATAGGTAATTGCTGGCCGACCATCCTGACGCT
TCTCATCGTGGCCAACTTGGTCGACGCACTGAAGACCGGGGAATCCATCC
AGTTGGCAACCGGGAGCCAGCCATCACTGAGCATAAACAATGCGGACGAC
AGCAGCCTGGAGCAGCTCATCGAGATGAGGCTGAATGAGTCTGCGTCCGC
ATCCTACCAGAACAACCAGTCAGCCAGCCAGGAGCTGTTGTCCCGGAAAC
GACGTTATTTGGTATTTCCGGAAGGCAGCTCCTTTCAGATGGTGTACGAT
GAGATTGTGGGAGTGGTGGACCACACGAACTACTTGATTCTGGGCATTAC
GGTGGCCCTGGCCTGGGAGCTGCCCAGCAAGCCGCCCAGCGAGGAGCTGG
ACGATCTGCTGACCAAGTTGGAGGACGGCACAATAGACATCAGTCGCAAC
GACACAGTGTCGAACATAACCTATGTGGATGTGGATGCAGATGTCACGAC
GACCACGACGAGCAGGCCGGCGGACTACAAGCCCAACTACATCAATTTGT
CGAGTTACGGCTCCTCCTCCTCCTCCTCCTCCTCGAGTGGCAGCAACTCC
TACTACAGCCTTTCGCCCGTTTTCCGCCCTCCCGATGCATCCGTCGCATC
GATATGCGGATAGTTATTACTCCTCACGTCCAAAGGGGGGCAGGCGGAAG
GACATCACTATTACTACAGTCGGGCCCGGGGGTCAGCTCCAGCTCCAGCA
TCCATTCGCCAAGTGGACGAGACCCTACTCTCACGCCCAGAACTCACGCT
TCCCTATGGGCTTTAACTCAAGACTCAAGATAGATACTACGGCTACAAAA
TTCAACAGGCAGCACCGCCAGCGCGCAGCGACGACAGGACATTACACCTC
CACCAGCGCACCACCACCAGTCGACCACTCGAAGGCAGCTCCTCGACATC
ATCGCTTTATCCGGGTTGGGCAATGCAGATTCCGGAGGTGCCAATCCATT
AACCCCATGAACCAGGGGAGGGCCCCTTAACATAGGGAA
FMO08881.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17782-RA | 1484 | CG17782-RA | 27..1079 | 9..1048 | 4670 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24371674..24372181 | 850..342 | 2310 | 98.6 | Minus |
| 3R | 32079331 | 3R | 24372403..24372736 | 342..9 | 1670 | 100 | Minus |
| 3R | 32079331 | 3R | 24371379..24371512 | 1005..877 | 375 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:59 has no hits.
FMO08881.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:16 Download gff for
FMO08881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17782-RA | 27..1053 | 9..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:30 Download gff for
FMO08881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17782-RA | 27..1053 | 9..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:44 Download gff for
FMO08881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17782-RA | 27..1053 | 9..1026 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:44 Download gff for
FMO08881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24371649..24372180 | 343..872 | 98 | <- | Minus |
| 3R | 24372403..24372736 | 9..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:30 Download gff for
FMO08881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20197371..20197902 | 343..872 | 98 | <- | Minus |
| arm_3R | 20198125..20198458 | 9..342 | 100 | | Minus |
