FMO08884.5prime Sequence
984 bp (976 high quality bases) assembled on 2010-08-03
> FMO08884.5prime
CAGTCGACATGAGTCGCACGGAGCAGACGTTGGAAGACCTGAAGTCGTAT
TTGCGGAGTCACAGCAAAATCCGCGAGCAGCGGTCGCACATGTCTAAGGT
TCACTCGGTCTGCTGGAATGCCGATGGTCGTTACCTGGCCTCCGGAAGCT
TCGACAAGACGGTGGTCGTCTACTCGCTGGAGCGGGACCGCTTCTTGAAG
GGCAACACATACCGGGGACACACTGCGTCCGTGGACCAGCTGTGTTGGCA
TCGCACCAATCCCGACCAGTTTGCCACCGCAAGCGGAGACAAGACCGTGC
GCATCTGGGACATACGAGTTGGAAAATGCGTATCGGTGACGAACACCAAG
GGGGAGAATATCAACATTGCCTGGTCGCCCGATGGCAAAACGATCGCCGT
GGGCAACAAGGAGGATCTGATCACCTTTATAGACACACGCACGAACAAGA
TTCGCGTGGAGGAGCCGTTCAGCTTCGAGGTCAACGAGATATCGTGGAAC
AACACCAACGACCTGTTCTTCCTAACCAACGGACTCGGCTGCATGCATAT
CCTCAGCTATCCCAGTCTCGAGCACCAGATGACCCTGAAGGCCCATCCCG
CCAACTGCATTTGCATTGAGTTCGGACCCACGGGTAAATACTTTGCCACT
GGCTCGGCGGACGCACAAGTCTCCTTGTGGGATGCCAACGAGCTGGCCTG
CCTGCGCATGATCAGCCGCCTGGAGTGGCCCGTCCGCACCATATCGTTTA
GCCACGACGAGCGAATGATTGCCTTGGCCAGCGAGGACCTCATTATCGAC
ATTGCCTTCACGGAGACGGGCGAGCGGGTAACCGACATTCACGTGGACGC
CTCCACGTTCACGGTGGCCTGGCATCCGAAGCAATCCTGCTGGCCTACGC
CTGCGATGAGAAGACAACGATCGGCGACGTGACGCTGGCAACGTTAAGAT
TTTATGGCTTTTCGGAAGCAAGCTTTCTGACCAT
FMO08884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tex-RA | 1063 | CG9615-RA | 71..1030 | 9..967 | 4685 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8307893..8308432 | 636..97 | 2700 | 100 | Minus |
| 3R | 32079331 | 3R | 8307506..8307841 | 967..633 | 1505 | 98.5 | Minus |
| 3R | 32079331 | 3R | 8308484..8308575 | 100..9 | 445 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:21 has no hits.
FMO08884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:23 Download gff for
FMO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tex-RA | 39..1012 | 1..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:37 Download gff for
FMO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tex-RA | 62..1035 | 1..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:34 Download gff for
FMO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tex-RA | 62..1035 | 1..972 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:34 Download gff for
FMO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8307501..8307840 | 634..972 | 97 | <- | Minus |
| 3R | 8307896..8308430 | 99..633 | 100 | <- | Minus |
| 3R | 8308486..8308584 | 1..98 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:37 Download gff for
FMO08884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4133223..4133562 | 634..972 | 97 | <- | Minus |
| arm_3R | 4133618..4134152 | 99..633 | 100 | <- | Minus |
| arm_3R | 4134208..4134306 | 1..98 | 94 | | Minus |
